1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00018286-RA

PSME_00018286-RA


Description : (at1g60560 : 118.0) SWIM zinc finger family protein; BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G13970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 236.0) & (original description: no original description)


Gene families : OG_42_0004674 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004674_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00018286-RA
Cluster HCCA clusters: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
PSME_00000002-RA No alias (at1g60560 : 122.0) SWIM zinc finger family protein;... 0.04 Orthogroups_2024-Update
PSME_00015766-RA No alias (at4g13970 : 122.0) zinc ion binding; FUNCTIONS IN: zinc... 0.05 Orthogroups_2024-Update
PSME_00022142-RA No alias (at4g13970 : 262.0) zinc ion binding; FUNCTIONS IN: zinc... 0.04 Orthogroups_2024-Update
PSME_00027977-RA No alias (at1g60560 : 152.0) SWIM zinc finger family protein;... 0.04 Orthogroups_2024-Update
PSME_00033102-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00033881-RA No alias (at1g60560 : 171.0) SWIM zinc finger family protein;... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004478 methionine adenosyltransferase activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Predicted GO
MF GO:0008430 selenium binding IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
BP GO:0046500 S-adenosylmethionine metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007527 Znf_SWIM 215 244
No external refs found!