Description : (at5g03760 : 369.0) encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3' UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root.; ATCSLA09; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: cellulose synthase-like A02 (TAIR:AT5G22740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 738.0) & (original description: no original description)
Gene families : OG_42_0000129 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000129_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00018384-RA | |
Cluster | HCCA clusters: Cluster_279 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_28293 | No alias | glucomannan 4-beta-mannosyltransferase 9 | 0.02 | Orthogroups_2024-Update | |
MA_96942g0010 | No alias | (at5g03760 : 870.0) encodes a beta-mannan synthase that... | 0.04 | Orthogroups_2024-Update | |
PSME_00009943-RA | No alias | (at4g31590 : 212.0) encodes a gene similar to cellulose... | 0.04 | Orthogroups_2024-Update | |
PSME_00015478-RA | No alias | (at4g31590 : 224.0) encodes a gene similar to cellulose... | 0.04 | Orthogroups_2024-Update | |
PSME_00038386-RA | No alias | (at5g03760 : 359.0) encodes a beta-mannan synthase that... | 0.04 | Orthogroups_2024-Update | |
PSME_00049213-RA | No alias | (at5g03760 : 244.0) encodes a beta-mannan synthase that... | 0.03 | Orthogroups_2024-Update | |
Pp1s36_62V6 | No alias | cellulose synthase-like A2, glycosyltransferase family 2... | 0.02 | Orthogroups_2024-Update | |
Solyc10g083670 | No alias | Cellulose synthase-like protein (AHRD V3.3 *** L0ASI8_POPTO) | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004519 | endonuclease activity | IEP | Predicted GO |
MF | GO:0004521 | endoribonuclease activity | IEP | Predicted GO |
MF | GO:0004540 | ribonuclease activity | IEP | Predicted GO |
MF | GO:0008131 | primary amine oxidase activity | IEP | Predicted GO |
MF | GO:0008430 | selenium binding | IEP | Predicted GO |
MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | Predicted GO |
MF | GO:0016641 | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | IEP | Predicted GO |
MF | GO:0016892 | endoribonuclease activity, producing 3'-phosphomonoesters | IEP | Predicted GO |
MF | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | IEP | Predicted GO |
MF | GO:0033897 | ribonuclease T2 activity | IEP | Predicted GO |
MF | GO:0048038 | quinone binding | IEP | Predicted GO |
No InterPro domains available for this sequence
No external refs found! |