1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00018428-RA

PSME_00018428-RA


Description : (q40636|expa2_orysa : 402.0) Expansin-A2 precursor (OsEXPA2) (Alpha-expansin-2) (OsEXP2) (OsaEXPa1.23) (RiExB) (RiExC) - Oryza sativa (Rice) & (at2g40610 : 400.0) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.; expansin A8 (EXPA8); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A2 (TAIR:AT5G05290.1); Has 2297 Blast hits to 2294 proteins in 186 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 45; Plants - 2187; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). & (reliability: 800.0) & (original description: no original description)


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00018428-RA
Cluster HCCA clusters: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
A4A49_04302 No alias expansin-a10 0.04 Orthogroups_2024-Update
A4A49_26789 No alias expansin-a3 0.04 Orthogroups_2024-Update
A4A49_33199 No alias expansin-a15 0.03 Orthogroups_2024-Update
A4A49_38718 No alias expansin-a7 0.03 Orthogroups_2024-Update
A4A49_64370 No alias expansin-a1 0.02 Orthogroups_2024-Update
At1g26770 No alias Expansin A10 [Source:UniProtKB/TrEMBL;Acc:F4HPC1] 0.03 Orthogroups_2024-Update
At4g01630 No alias EXPA17 [Source:UniProtKB/TrEMBL;Acc:A0A178UWZ2] 0.04 Orthogroups_2024-Update
At5g05290 No alias Expansin-A2 [Source:UniProtKB/Swiss-Prot;Acc:Q38866] 0.04 Orthogroups_2024-Update
At5g39310 No alias Expansin-A24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL76] 0.05 Orthogroups_2024-Update
Bradi3g09950 No alias expansin 11 0.02 Orthogroups_2024-Update
Bradi3g59460 No alias expansin A1 0.02 Orthogroups_2024-Update
Bradi5g04120 No alias expansin 11 0.03 Orthogroups_2024-Update
Brara.C00061.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Brara.D00393.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Brara.G02887.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Brara.I01201.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Cre02.g076987 No alias expansin A15 0.01 Orthogroups_2024-Update
GRMZM2G073373 No alias expansin 11 0.03 Orthogroups_2024-Update
Glyma.02G248500 No alias expansin A4 0.03 Orthogroups_2024-Update
Glyma.06G021700 No alias expansin 11 0.03 Orthogroups_2024-Update
Glyma.06G195000 No alias expansin A15 0.03 Orthogroups_2024-Update
Glyma.07G132600 No alias Barwin-like endoglucanases superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G037700 No alias expansin A4 0.03 Orthogroups_2024-Update
Glyma.18G265400 No alias expansin A23 0.04 Orthogroups_2024-Update
LOC_Os01g14650 No alias expansin precursor, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os01g60770 No alias expansin precursor, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os02g51040 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g06000 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g15840 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
MA_40314g0010 No alias (q40636|expa2_orysa : 396.0) Expansin-A2 precursor... 0.03 Orthogroups_2024-Update
MA_4979g0010 No alias (q40636|expa2_orysa : 406.0) Expansin-A2 precursor... 0.08 Orthogroups_2024-Update
MA_792493g0010 No alias (at1g69530 : 351.0) Member of Alpha-Expansin Gene... 0.05 Orthogroups_2024-Update
Mp1g24230.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Mp3g10160.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Mp8g18860.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
PSME_00009798-RA No alias (at1g69530 : 350.0) Member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00014026-RA No alias (at1g69530 : 221.0) Member of Alpha-Expansin Gene... 0.07 Orthogroups_2024-Update
PSME_00019942-RA No alias (at1g12560 : 376.0) Member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
PSME_00025835-RA No alias (at1g26770 : 394.0) Encodes an expansin. Naming... 0.05 Orthogroups_2024-Update
PSME_00025836-RA No alias (at2g40610 : 399.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
PSME_00030400-RA No alias (q9m4x7|expa6_orysa : 228.0) Expansin-A6 precursor... 0.04 Orthogroups_2024-Update
PSME_00051817-RA No alias (at1g20190 : 379.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00052085-RA No alias (at1g69530 : 372.0) Member of Alpha-Expansin Gene... 0.05 Orthogroups_2024-Update
Potri.001G240900 No alias expansin A4 0.03 Orthogroups_2024-Update
Potri.001G401700 No alias expansin 12 0.02 Orthogroups_2024-Update
Potri.004G123200 No alias expansin A1 0.04 Orthogroups_2024-Update
Potri.006G086100 No alias Barwin-like endoglucanases superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G097500 No alias expansin A4 0.02 Orthogroups_2024-Update
Potri.016G098700 No alias Barwin-like endoglucanases superfamily protein 0.04 Orthogroups_2024-Update
Potri.017G140000 No alias expansin A13 0.03 Orthogroups_2024-Update
Pp1s11_29V6 No alias expansin 2 0.02 Orthogroups_2024-Update
Pp1s196_30V6 No alias expansin 2 0.02 Orthogroups_2024-Update
Pp1s246_53V6 No alias alpha-expansin 1 0.03 Orthogroups_2024-Update
Pp1s251_70V6 No alias alpha-expansin 15 0.02 Orthogroups_2024-Update
Pp1s266_66V6 No alias alpha expansin xpa5 0.02 Orthogroups_2024-Update
Pp1s325_11V6 No alias expa6 gene for putative alpha expansin protein family EXPA6 0.02 Orthogroups_2024-Update
Pp1s34_7V6 No alias alpha-expansin 8 0.02 Orthogroups_2024-Update
Pp1s75_138V6 No alias alpha-expansin 8 0.02 Orthogroups_2024-Update
Seita.5G044100.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Seita.6G086300.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sobic.001G033300.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sobic.001G314600.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sobic.003G444400.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.004G121900.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.004G238801.1 No alias alpha-class expansin 0.01 Orthogroups_2024-Update
Sobic.010G006200.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Solyc09g010860 No alias expansin precursor 4 0.02 Orthogroups_2024-Update
Solyc10g086520 No alias expansin 6 0.03 Orthogroups_2024-Update
Sopen02g032810 No alias Pollen allergen 0.03 Orthogroups_2024-Update
Sopen04g035500 No alias Pollen allergen 0.03 Orthogroups_2024-Update
Sopen09g005600 No alias Pollen allergen 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Predicted GO
MF GO:0004478 methionine adenosyltransferase activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Predicted GO
BP GO:0006732 coenzyme metabolic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008172 S-methyltransferase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009086 methionine biosynthetic process IEP Predicted GO
BP GO:0009108 coenzyme biosynthetic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0046500 S-adenosylmethionine metabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 62 148
IPR007117 Expansin_CBD 160 237
No external refs found!