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  5. PSME_00018599-RA

PSME_00018599-RA


Description : (at5g03340 : 512.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 512.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1024.0) & (original description: no original description)


Gene families : OG_42_0000328 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000328_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00018599-RA
Cluster HCCA clusters: Cluster_848

Target Alias Description ECC score Gene Family Method Actions
A4A49_33950 No alias calmodulin-interacting protein 111 0.01 Orthogroups_2024-Update
Bradi1g74916 No alias ATPase, AAA-type, CDC48 protein 0.02 Orthogroups_2024-Update
GRMZM2G703490 No alias ATPase, AAA-type, CDC48 protein 0.01 Orthogroups_2024-Update
Glyma.06G180000 No alias ATPase, AAA-type, CDC48 protein 0.03 Orthogroups_2024-Update
Glyma.19G127101 No alias Cam interacting protein 111 0.02 Orthogroups_2024-Update
PSME_00022626-RA No alias (at5g03340 : 929.0) ATPase, AAA-type, CDC48 protein;... 0.04 Orthogroups_2024-Update
PSME_00052881-RA No alias (at5g03340 : 406.0) ATPase, AAA-type, CDC48 protein;... 0.02 Orthogroups_2024-Update
Potri.006G125500 No alias ATPase, AAA-type, CDC48 protein 0.01 Orthogroups_2024-Update
Pp1s99_139V6 No alias transitional endoplasmic reticulum 0.01 Orthogroups_2024-Update
Solyc11g069720 No alias Cell division cycle protein 48 homolog (AHRD V3.3 ***... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 83 173
IPR003959 ATPase_AAA_core 318 360
No external refs found!