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  5. PSME_00018672-RA

PSME_00018672-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0000421 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00018672-RA
Cluster HCCA clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
A4A49_24316 No alias early light-induced protein 1, chloroplastic 0.03 Orthogroups_2024-Update
At3g22840 No alias ELIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VCA8] 0.02 Orthogroups_2024-Update
At4g14690 No alias Early light-induced protein 2, chloroplastic... 0.02 Orthogroups_2024-Update
Bradi1g55600 No alias Chlorophyll A-B binding family protein 0.02 Orthogroups_2024-Update
Bradi1g55620 No alias Chlorophyll A-B binding family protein 0.02 Orthogroups_2024-Update
Glyma.10G243800 No alias Chlorophyll A-B binding family protein 0.04 Orthogroups_2024-Update
Glyma.20G150600 No alias Chlorophyll A-B binding family protein 0.03 Orthogroups_2024-Update
MA_183315g0010 No alias (p11432|eli_pea : 138.0) Early light-induced protein,... 0.03 Orthogroups_2024-Update
Mp3g15980.1 No alias ELIP LHC-related protein 0.04 Orthogroups_2024-Update
Seita.2G053300.1 No alias LHC-related protein *(ELIP) 0.02 Orthogroups_2024-Update
Sobic.002G052100.1 No alias LHC-related protein *(ELIP) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 31 56
No external refs found!