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  5. PSME_00018743-RA

PSME_00018743-RA


Description : (p30278|ccnb2_medsa : 274.0) G2/mitotic-specific cyclin-2 (B-like cyclin) (CycMs2) (Fragment) - Medicago sativa (Alfalfa) & (at1g76310 : 267.0) core cell cycle genes; CYCLIN B2;4 (CYCB2;4); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin B2;3 (TAIR:AT1G20610.1); Has 4261 Blast hits to 4252 proteins in 371 species: Archae - 0; Bacteria - 0; Metazoa - 1989; Fungi - 541; Plants - 1112; Viruses - 30; Other Eukaryotes - 589 (source: NCBI BLink). & (reliability: 502.0) & (original description: no original description)


Gene families : OG_42_0000120 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00018743-RA
Cluster HCCA clusters: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
Kfl00112_0070 kfl00112_0070_v1.... (at1g80370 : 326.0) Cyclin A2;4 (CYCA2;4); CONTAINS... 0.01 Orthogroups_2024-Update
MA_28323g0010 No alias (at5g11300 : 355.0) mitotic-like cyclin, core cell cycle... 0.01 Orthogroups_2024-Update
MA_88982g0010 No alias (at5g11300 : 380.0) mitotic-like cyclin, core cell cycle... 0.01 Orthogroups_2024-Update
PSME_00003868-RA No alias (p30278|ccnb2_medsa : 305.0) G2/mitotic-specific... 0.05 Orthogroups_2024-Update
Solyc04g078310 No alias cyclin A3_1 0.02 Orthogroups_2024-Update
Solyc12g088470 No alias cyclin A3_4 0.02 Orthogroups_2024-Update
Solyc12g088500 No alias cyclin A3_5 0.02 Orthogroups_2024-Update
Solyc12g088520 No alias cyclin A3_3 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR006671 Cyclin_N 150 264
IPR021720 Malectin_dom 2 58
IPR004367 Cyclin_C-dom 266 343
No external refs found!