1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00018776-RA

PSME_00018776-RA


Description : no hits & (original description: no original description)


Gene families : OG_42_0000662 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000662_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00018776-RA
Cluster HCCA clusters: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
PSME_00014942-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00023261-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00040685-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00048074-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00054799-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR025558 DUF4283 173 312
IPR025558 DUF4283 1162 1252
IPR026960 RVT-Znf 918 965
No external refs found!