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  5. PSME_00018868-RA

PSME_00018868-RA


Description : (at4g13345 : 316.0) maternal effect embryo arrest 55 (MEE55); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G24460.1); Has 836 Blast hits to 765 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 450; Fungi - 174; Plants - 143; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). & (p46466|prs4_orysa : 154.0) 26S protease regulatory subunit 4 homolog (TAT-binding protein homolog 2) - Oryza sativa (Rice) & (reliability: 632.0) & (original description: no original description)


Gene families : OG_42_0001935 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001935_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00018868-RA
Cluster HCCA clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Brara.G00683.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Glyma.08G039500 No alias Serinc-domain containing serine and sphingolipid... 0.07 Orthogroups_2024-Update
Glyma.09G188500 No alias Serinc-domain containing serine and sphingolipid... 0.03 Orthogroups_2024-Update
Potri.018G076000 No alias Serinc-domain containing serine and sphingolipid... 0.02 Orthogroups_2024-Update
Sopen01g041260 No alias Serine incorporator (Serinc) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR005016 TDE1/TMS 183 378
IPR005016 TDE1/TMS 105 182
No external refs found!