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    2. Species
    3. Pseudotsuga menziesii
    4. Sequence
    5. PSME_00018889-RA

    PSME_00018889-RA


    Description : no hits & (original description: no original description)


    Gene families : OG_42_0000526 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000526_tree

    Sequence : coding (download), protein (download)

    Expression Profile


    Attention: This gene has low abundance.


    Download

    Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


    Co-expression Networks

    Type Description Actions
    Neighborhood Pseudotsuga release: PSME_00018889-RA
    Cluster HCCA clusters: Cluster_82

Expression Context Conservation (ECC)

Target Alias Description ECC score Gene Family Method Actions
90204 No alias SAUR-like auxin-responsive protein family 0.03 Orthogroups_2024-Update
MA_10023022g0010 No alias (at3g12830 : 88.6) SAUR-like auxin-responsive protein... 0.02 Orthogroups_2024-Update
MA_40406g0010 No alias (at1g56150 : 87.8) SAUR-like auxin-responsive protein... 0.04 Orthogroups_2024-Update
PSME_00027194-RA No alias (at1g56150 : 81.6) SAUR-like auxin-responsive protein... 0.03 Orthogroups_2024-Update
Seita.3G398000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G053400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G224600.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Functional Annotation

  • GO
  • Predicted GO
  • InterPro
Type GO Term Name Evidence Source
BP GO:0008150 biological_process None Extended
BP GO:0009719 response to endogenous stimulus None Extended
BP GO:0009725 response to hormone None Extended
BP GO:0009733 response to auxin IEA InterProScan predictions
BP GO:0010033 response to organic substance None Extended
BP GO:0042221 response to chemical None Extended
BP GO:0050896 response to stimulus None Extended
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003676 SAUR_fam 123 207
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