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  5. PSME_00018934-RA

PSME_00018934-RA


Description : (at5g05390 : 747.0) putative laccase, a member of laccase family of genes (17 members in Arabidopsis).; laccase 12 (LAC12); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p14133|aso_cucsa : 213.0) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Cucumis sativus (Cucumber) & (reliability: 1494.0) & (original description: no original description)


Gene families : OG_42_0000051 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00018934-RA
Cluster HCCA clusters: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
404075 No alias laccase 12 0.02 Orthogroups_2024-Update
A4A49_01901 No alias laccase-15 0.02 Orthogroups_2024-Update
A4A49_18568 No alias laccase-4 0.03 Orthogroups_2024-Update
At3g09220 No alias Laccase-7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR40] 0.03 Orthogroups_2024-Update
At5g09360 No alias Laccase-14 [Source:UniProtKB/Swiss-Prot;Acc:Q9FY79] 0.04 Orthogroups_2024-Update
Bradi1g66720 No alias laccase 17 0.02 Orthogroups_2024-Update
Brara.D02326.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update
Glyma.07G142600 No alias Laccase/Diphenol oxidase family protein 0.02 Orthogroups_2024-Update
Glyma.14G198900 No alias laccase 3 0.03 Orthogroups_2024-Update
Glyma.18G197400 No alias Laccase/Diphenol oxidase family protein 0.04 Orthogroups_2024-Update
MA_10433807g0010 No alias (q40588|aso_tobac : 375.0) L-ascorbate oxidase precursor... 0.03 Orthogroups_2024-Update
MA_28768g0010 No alias (at2g38080 : 580.0) Encodes a protein with similarity to... 0.03 Orthogroups_2024-Update
MA_897132g0010 No alias (at2g40370 : 560.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00001502-RA No alias (at2g38080 : 615.0) Encodes a protein with similarity to... 0.04 Orthogroups_2024-Update
PSME_00005164-RA No alias (at5g05390 : 649.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00013635-RA No alias (at5g05390 : 645.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00013636-RA No alias (at2g40370 : 639.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00030935-RA No alias (at5g05390 : 627.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
PSME_00031560-RA No alias (at5g05390 : 678.0) putative laccase, a member of... 0.05 Orthogroups_2024-Update
PSME_00042619-RA No alias (at5g05390 : 581.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
Potri.006G087100 No alias laccase 17 0.02 Orthogroups_2024-Update
Seita.4G282400.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update
Sobic.004G236100.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update
Sobic.010G268500.1 No alias EC_1.10 oxidoreductase acting on diphenol or related... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA InterProScan predictions
MF GO:0016491 oxidoreductase activity IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004096 catalase activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR011707 Cu-oxidase_3 50 150
IPR011706 Cu-oxidase_2 420 550
IPR001117 Cu-oxidase 167 312
No external refs found!