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  5. PSME_00018989-RA

PSME_00018989-RA


Description : (at4g26090 : 240.0) Encodes a plasma membrane protein with leucine-rich repeat, leucine zipper, and P loop domains that confers resistance to Pseudomonas syringae infection by interacting with the avirulence gene avrRpt2. RPS2 protein interacts directly with plasma membrane associated protein RIN4 and this interaction is disrupted by avrRpt2.; RESISTANT TO P. SYRINGAE 2 (RPS2); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: RPS5-like 1 (TAIR:AT1G12210.1); Has 21906 Blast hits to 18242 proteins in 683 species: Archae - 18; Bacteria - 1169; Metazoa - 4701; Fungi - 258; Plants - 15223; Viruses - 0; Other Eukaryotes - 537 (source: NCBI BLink). & (reliability: 480.0) & (original description: no original description)


Gene families : OG_42_0000113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00018989-RA
Cluster HCCA clusters: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
Brara.J01389.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G077670.1 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_10426603g0010 No alias (at4g27220 : 233.0) NB-ARC domain-containing disease... 0.02 Orthogroups_2024-Update
MA_10427619g0010 No alias (at1g69550 : 114.0) disease resistance protein... 0.03 Orthogroups_2024-Update
MA_10428221g0010 No alias (at1g12280 : 159.0) LRR and NB-ARC domains-containing... 0.03 Orthogroups_2024-Update
MA_10435995g0040 No alias (at4g27190 : 188.0) NB-ARC domain-containing disease... 0.03 Orthogroups_2024-Update
MA_10436071g0030 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_122523g0010 No alias (at1g12210 : 224.0) RFL1 has high sequence similarity to... 0.03 Orthogroups_2024-Update
MA_451961g0010 No alias (at1g12280 : 177.0) LRR and NB-ARC domains-containing... 0.04 Orthogroups_2024-Update
MA_674039g0010 No alias (at5g63020 : 154.0) Disease resistance protein... 0.03 Orthogroups_2024-Update
MA_8869735g0010 No alias (at1g61300 : 128.0) LRR and NB-ARC domains-containing... 0.05 Orthogroups_2024-Update
PSME_00000174-RA No alias (at1g63350 : 147.0) Disease resistance protein... 0.06 Orthogroups_2024-Update
PSME_00004005-RA No alias (at1g15890 : 219.0) Disease resistance protein... 0.04 Orthogroups_2024-Update
PSME_00004155-RA No alias (at1g12220 : 266.0) Resistance gene, mediates resistance... 0.04 Orthogroups_2024-Update
PSME_00004450-RA No alias (at4g10780 : 156.0) LRR and NB-ARC domains-containing... 0.06 Orthogroups_2024-Update
PSME_00004922-RA No alias (at1g12280 : 266.0) LRR and NB-ARC domains-containing... 0.05 Orthogroups_2024-Update
PSME_00005482-RA No alias (at4g27220 : 208.0) NB-ARC domain-containing disease... 0.04 Orthogroups_2024-Update
PSME_00009853-RA No alias (at1g12280 : 271.0) LRR and NB-ARC domains-containing... 0.04 Orthogroups_2024-Update
PSME_00011883-RA No alias (at4g27220 : 218.0) NB-ARC domain-containing disease... 0.05 Orthogroups_2024-Update
PSME_00033120-RA No alias (at1g63350 : 267.0) Disease resistance protein... 0.05 Orthogroups_2024-Update
PSME_00037099-RA No alias (at4g26090 : 230.0) Encodes a plasma membrane protein... 0.06 Orthogroups_2024-Update
PSME_00040363-RA No alias (at5g63020 : 222.0) Disease resistance protein... 0.04 Orthogroups_2024-Update
PSME_00045260-RA No alias (at1g12220 : 264.0) Resistance gene, mediates resistance... 0.06 Orthogroups_2024-Update
PSME_00048940-RA No alias (at4g27220 : 141.0) NB-ARC domain-containing disease... 0.06 Orthogroups_2024-Update
PSME_00053148-RA No alias (at1g12210 : 218.0) RFL1 has high sequence similarity to... 0.04 Orthogroups_2024-Update
PSME_00056619-RA No alias (at4g27220 : 229.0) NB-ARC domain-containing disease... 0.04 Orthogroups_2024-Update
PSME_00056885-RA No alias (at4g27220 : 223.0) NB-ARC domain-containing disease... 0.06 Orthogroups_2024-Update
Potri.019G002800 No alias LRR and NB-ARC domains-containing disease resistance protein 0.03 Orthogroups_2024-Update
Potri.019G020500 No alias NB-ARC domain-containing disease resistance protein 0.03 Orthogroups_2024-Update
Potri.T013900 No alias NB-ARC domain-containing disease resistance protein 0.02 Orthogroups_2024-Update
Potri.T024900 No alias NB-ARC domain-containing disease resistance protein 0.02 Orthogroups_2024-Update
Sobic.003G435900.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0043531 ADP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 537 595
IPR002182 NB-ARC 159 397
No external refs found!