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  5. PSME_00019002-RA

PSME_00019002-RA


Description : (at3g44540 : 395.0) Encodes a member of the eight-member gene family encoding alcohol-forming fatty acyl-CoA reductases (FARs) identified in Arabidopsis thaliana. Three of the FARs, FAR1 (At5g22500), FAR4 (At3g44540) and FAR5 (At3g44550), are shown to generate the fatty alcohols found in root, seed coat, and wound-induced leaf tissue.; fatty acid reductase 4 (FAR4); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: fatty acid reductase 1 (TAIR:AT5G22500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 790.0) & (original description: no original description)


Gene families : OG_42_0000301 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00019002-RA
Cluster HCCA clusters: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
A4A49_16197 No alias fatty acyl-coa reductase 3 0.04 Orthogroups_2024-Update
Bradi2g47121 No alias fatty acid reductase 4 0.05 Orthogroups_2024-Update
Bradi4g37856 No alias fatty acid reductase 1 0.03 Orthogroups_2024-Update
Bradi4g37862 No alias fatty acid reductase 1 0.03 Orthogroups_2024-Update
Bradi4g38460 No alias fatty acid reductase 4 0.08 Orthogroups_2024-Update
Brara.B00974.1 No alias fatty acyl CoA reductase *(FAR) 0.03 Orthogroups_2024-Update
Brara.E02963.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G01704.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G01705.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.13G317700 No alias Jojoba acyl CoA reductase-related male sterility protein 0.03 Orthogroups_2024-Update
LOC_Os03g07140 No alias male sterility protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g28520 No alias male sterility protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g28620 No alias male sterility protein, putative, expressed 0.02 Orthogroups_2024-Update
Potri.009G144900 No alias Jojoba acyl CoA reductase-related male sterility protein 0.06 Orthogroups_2024-Update
Potri.016G031600 No alias Jojoba acyl CoA reductase-related male sterility protein 0.03 Orthogroups_2024-Update
Potri.019G075300 No alias fatty acid reductase 4 0.03 Orthogroups_2024-Update
Pp1s136_166V6 No alias T21B14.18; male sterility protein 2 (MS2) [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Pp1s31_174V6 No alias male sterility protein 2 0.02 Orthogroups_2024-Update
Seita.2G132800.1 No alias fatty acyl CoA reductase *(FAR) 0.02 Orthogroups_2024-Update
Seita.2G306800.1 No alias fatty acyl CoA reductase *(FAR) 0.02 Orthogroups_2024-Update
Seita.6G243900.1 No alias fatty acyl CoA reductase *(FAR) 0.03 Orthogroups_2024-Update
Sobic.004G144200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.005G063300.1 No alias fatty acyl CoA reductase *(FAR) 0.02 Orthogroups_2024-Update
Solyc09g005940 No alias Fatty acyl-CoA reductase (AHRD V3.3 *** K4CQ84_SOLLC) 0.03 Orthogroups_2024-Update
Solyc11g067190 No alias Fatty acyl-CoA reductase (AHRD V3.3 *** K4D9X6_SOLLC) 0.03 Orthogroups_2024-Update
Sopen11g026870 No alias Male sterility protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006308 DNA catabolic process IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR013120 Male_sterile_NAD-bd 523 732
IPR013120 Male_sterile_NAD-bd 12 343
IPR033640 FAR_C 429 509
IPR033640 FAR_C 799 876
No external refs found!