1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00019067-RA

PSME_00019067-RA


Description : (at1g52150 : 1149.0) Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation.; ATHB-15; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox gene 8 (TAIR:AT4G32880.1); Has 3126 Blast hits to 3055 proteins in 249 species: Archae - 0; Bacteria - 0; Metazoa - 767; Fungi - 91; Plants - 2233; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 2298.0) & (original description: no original description)


Gene families : OG_42_0000541 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000541_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00019067-RA
Cluster HCCA clusters: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
A4A49_27329 No alias homeobox-leucine zipper protein athb-14 0.03 Orthogroups_2024-Update
GRMZM2G178102 No alias Homeobox-leucine zipper family protein / lipid-binding... 0.03 Orthogroups_2024-Update
PSME_00011963-RA No alias (at1g52150 : 192.0) Member of the class III HD-ZIP... 0.03 Orthogroups_2024-Update
Pp1s55_99V6 No alias homeodomain-leucine zipper trancription factor hb-3 0.03 Orthogroups_2024-Update
Seita.5G141300.1 No alias HD-ZIP III-type transcription factor 0.03 Orthogroups_2024-Update
Sopen03g039740 No alias MEKHLA domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0008289 lipid binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
BP GO:0032780 negative regulation of ATPase activity IEP Predicted GO
MF GO:0042030 ATPase inhibitor activity IEP Predicted GO
BP GO:0043086 negative regulation of catalytic activity IEP Predicted GO
BP GO:0043462 regulation of ATPase activity IEP Predicted GO
BP GO:0044092 negative regulation of molecular function IEP Predicted GO
BP GO:0051336 regulation of hydrolase activity IEP Predicted GO
BP GO:0051346 negative regulation of hydrolase activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR013978 MEKHLA 686 828
IPR002913 START_lipid-bd_dom 160 367
IPR001356 Homeobox_dom 15 72
No external refs found!