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  5. PSME_00019080-RA

PSME_00019080-RA


Description : (at5g41460 : 468.0) Protein of unknown function (DUF604); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G23490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 936.0) & (original description: no original description)


Gene families : OG_42_0000161 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000161_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00019080-RA
Cluster HCCA clusters: Cluster_664

Target Alias Description ECC score Gene Family Method Actions
At1g01570 No alias F22L4.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LMM4] 0.03 Orthogroups_2024-Update
At4g11350 No alias At4g11350 [Source:UniProtKB/TrEMBL;Acc:B6IDH2] 0.04 Orthogroups_2024-Update
Brara.A01351.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.J00348.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.J00349.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.09G256300 No alias Protein of unknown function (DUF604) 0.03 Orthogroups_2024-Update
LOC_Os11g02650 No alias fringe-related protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00029840-RA No alias (at1g07850 : 422.0) Protein of unknown function... 0.02 Orthogroups_2024-Update
PSME_00029842-RA No alias (at5g41460 : 477.0) Protein of unknown function... 0.01 Orthogroups_2024-Update
PSME_00037862-RA No alias (at1g07850 : 255.0) Protein of unknown function... 0.05 Orthogroups_2024-Update
PSME_00053200-RA No alias (at1g33250 : 574.0) Protein of unknown function... 0.04 Orthogroups_2024-Update
Sobic.001G525600.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
MF GO:0008172 S-methyltransferase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009086 methionine biosynthetic process IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006740 DUF604 290 544
No external refs found!