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  5. PSME_00019118-RA

PSME_00019118-RA


Description : (at1g27650 : 306.0) U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.; ATU2AF35A; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: photoperiodism, flowering; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 auxiliary factor small subunit (InterPro:IPR009145); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G42820.1); Has 5086 Blast hits to 4097 proteins in 292 species: Archae - 0; Bacteria - 77; Metazoa - 3138; Fungi - 590; Plants - 568; Viruses - 11; Other Eukaryotes - 702 (source: NCBI BLink). & (reliability: 612.0) & (original description: no original description)


Gene families : OG_42_0001056 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001056_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00019118-RA
Cluster HCCA clusters: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
Sopen11g026540 No alias Zinc finger C-x8-C-x5-C-x3-H type (and similar) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 83 139
IPR000571 Znf_CCCH 150 173
IPR000571 Znf_CCCH 14 37
No external refs found!