PSME_00019170-RA

Description : (at5g06530 : 722.0) ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G52310.1); Has 401964 Blast hits to 364471 proteins in 4136 species: Archae - 7187; Bacteria - 315702; Metazoa - 9377; Fungi - 6648; Plants - 5639; Viruses - 7; Other Eukaryotes - 57404 (source: NCBI BLink). & (q7fmw4|pdr15_orysa : 214.0) Pleiotropic drug resistance protein 15 - Oryza sativa (Rice) & (reliability: 1444.0) & (original description: no original description)

Gene families : OG_42_0000429 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000429_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00019170-RA

Target	Alias	Description	ECC score	Gene Family Method
Brara.I02713.1	No alias	cytokinin transporter *(ABCG14) & subfamily ABCG transporter	0.02	Orthogroups_2024-Update
GRMZM2G109527	No alias	ATP-binding casette family G25	0.02	Orthogroups_2024-Update
Glyma.11G090200	No alias	ATP-binding cassette 14	0.04	Orthogroups_2024-Update
Glyma.20G174800	No alias	ATP-binding casette family G25	0.06	Orthogroups_2024-Update
Kfl00050_0290	kfl00050_0290_v1.1	(at5g06530 : 526.0) ABC-2 type transporter family...	0.01	Orthogroups_2024-Update
LOC_Os08g07010	No alias	ABC-2 type transporter domain containing protein, expressed	0.02	Orthogroups_2024-Update
Potri.006G199500	No alias	ABC-2 type transporter family protein	0.02	Orthogroups_2024-Update
Potri.013G111900	No alias	ATP-binding casette family G25	0.02	Orthogroups_2024-Update
Pp1s65_100V6	No alias	atp-binding cassette	0.02	Orthogroups_2024-Update
Sopen08g001610	No alias	ABC-2 type transporter	0.03	Orthogroups_2024-Update
evm.model.contig_2112.2	No alias	(at5g06530 : 343.0) ABC-2 type transporter family...	0.01	Orthogroups_2024-Update
evm.model.tig00000053.5	No alias	(at4g27420 : 187.0) ABC-2 type transporter family...	0.02	Orthogroups_2024-Update
evm.model.tig00000605.36	No alias	(at3g13220 : 253.0) Encodes a ATP-binding cassette...	0.01	Orthogroups_2024-Update
evm.model.tig00020614.26	No alias	(at4g27420 : 244.0) ABC-2 type transporter family...	0.03	Orthogroups_2024-Update
evm.model.tig00020685.31	No alias	(at5g06530 : 184.0) ABC-2 type transporter family...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0008144	drug binding	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	Predicted GO
MF	GO:0008171	O-methyltransferase activity	IEP	Predicted GO
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	IEP	Predicted GO
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Predicted GO
MF	GO:0022857	transmembrane transporter activity	IEP	Predicted GO
MF	GO:0042623	ATPase activity, coupled	IEP	Predicted GO
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEP	Predicted GO
MF	GO:0043492	ATPase activity, coupled to movement of substances	IEP	Predicted GO
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	Predicted GO
BP	GO:0055085	transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR013525	ABC_2_trans	581	789
IPR003439	ABC_transporter-like	260	410

External Links

No external refs found!

PSME_00019170-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation