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  5. PSME_00019325-RA

PSME_00019325-RA


Description : (at2g41050 : 249.0) PQ-loop repeat family protein / transmembrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT4G36850.1); Has 930 Blast hits to 673 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 545; Plants - 89; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink). & (reliability: 498.0) & (original description: no original description)


Gene families : OG_42_0001884 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001884_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00019325-RA
Cluster HCCA clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
A4A49_10569 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Brara.A00188.1 No alias non-specific cation channel *(PQL1) 0.04 Orthogroups_2024-Update
Glyma.16G142300 No alias PQ-loop repeat family protein / transmembrane family protein 0.02 Orthogroups_2024-Update
LOC_Os01g16170 No alias PQ loop repeat domain containing protein, expressed 0.03 Orthogroups_2024-Update
PSME_00012011-RA No alias (at4g36850 : 254.0) PQ-loop repeat family protein /... 0.04 Orthogroups_2024-Update
PSME_00012012-RA No alias (at4g36850 : 278.0) PQ-loop repeat family protein /... 0.04 Orthogroups_2024-Update
PSME_00012279-RA No alias (at2g41050 : 164.0) PQ-loop repeat family protein /... 0.04 Orthogroups_2024-Update
PSME_00032907-RA No alias (at4g36850 : 84.7) PQ-loop repeat family protein /... 0.04 Orthogroups_2024-Update
Potri.007G031800 No alias PQ-loop repeat family protein / transmembrane family protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006417 regulation of translation IEP Predicted GO
BP GO:0006448 regulation of translational elongation IEP Predicted GO
BP GO:0006449 regulation of translational termination IEP Predicted GO
BP GO:0006452 translational frameshifting IEP Predicted GO
BP GO:0009891 positive regulation of biosynthetic process IEP Predicted GO
BP GO:0009893 positive regulation of metabolic process IEP Predicted GO
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010608 posttranscriptional regulation of gene expression IEP Predicted GO
BP GO:0010628 positive regulation of gene expression IEP Predicted GO
BP GO:0031325 positive regulation of cellular metabolic process IEP Predicted GO
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032268 regulation of cellular protein metabolic process IEP Predicted GO
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Predicted GO
BP GO:0034248 regulation of cellular amide metabolic process IEP Predicted GO
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
BP GO:0043243 positive regulation of protein complex disassembly IEP Predicted GO
BP GO:0043244 regulation of protein complex disassembly IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0045727 positive regulation of translation IEP Predicted GO
BP GO:0045901 positive regulation of translational elongation IEP Predicted GO
BP GO:0045905 positive regulation of translational termination IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
BP GO:0048522 positive regulation of cellular process IEP Predicted GO
BP GO:0051128 regulation of cellular component organization IEP Predicted GO
BP GO:0051130 positive regulation of cellular component organization IEP Predicted GO
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
BP GO:0051247 positive regulation of protein metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006603 PQ-loop_rpt 29 84
IPR006603 PQ-loop_rpt 323 381
No external refs found!