1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00019419-RA

PSME_00019419-RA


Description : (at3g10260 : 207.0) Reticulon family protein; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT3G61560.1); Has 1060 Blast hits to 1060 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 591; Fungi - 0; Plants - 458; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). & (reliability: 386.0) & (original description: no original description)


Gene families : OG_42_0000160 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000160_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00019419-RA
Cluster HCCA clusters: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
113819 No alias VIRB2-interacting protein 2 0.03 Orthogroups_2024-Update
96839 No alias Reticulon family protein 0.03 Orthogroups_2024-Update
A4A49_03591 No alias reticulon-like protein b2 0.03 Orthogroups_2024-Update
At2g01240 No alias Reticulon family protein [Source:TAIR;Acc:AT2G01240] 0.02 Orthogroups_2024-Update
At4g23630 No alias Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178V247] 0.03 Orthogroups_2024-Update
Bradi2g02590 No alias VIRB2-interacting protein 3 0.05 Orthogroups_2024-Update
GRMZM2G157629 No alias VIRB2-interacting protein 1 0.05 Orthogroups_2024-Update
Glyma.03G076200 No alias Reticulon family protein 0.03 Orthogroups_2024-Update
Glyma.08G019300 No alias VIRB2-interacting protein 2 0.03 Orthogroups_2024-Update
Glyma.11G201400 No alias VIRB2-interacting protein 1 0.03 Orthogroups_2024-Update
Glyma.18G115300 No alias Reticulon family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G083110.6 No alias ER-tubule curvature-inducing protein *(Reticulon) 0.03 Orthogroups_2024-Update
LOC_Os05g24770 No alias reticulon domain containing protein, putative, expressed 0.06 Orthogroups_2024-Update
Potri.002G165400 No alias Reticulon family protein 0.02 Orthogroups_2024-Update
Potri.012G054100 No alias Reticulon family protein 0.02 Orthogroups_2024-Update
Pp1s351_44V6 No alias seed maturation protein 0.03 Orthogroups_2024-Update
Pp1s421_1V6 No alias seed maturation protein 0.02 Orthogroups_2024-Update
Seita.3G117700.1 No alias ER-tubule curvature-inducing protein *(Reticulon) 0.03 Orthogroups_2024-Update
Solyc08g081730 No alias Reticulon-like protein (AHRD V3.3 *** K4CPG9_SOLLC) 0.02 Orthogroups_2024-Update
Sopen06g015420 No alias Reticulon 0.03 Orthogroups_2024-Update
Sopen12g002240 No alias Reticulon 0.02 Orthogroups_2024-Update
evm.model.contig_2198.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004421 hydroxymethylglutaryl-CoA synthase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003388 Reticulon 36 190
No external refs found!