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  5. PSME_00019432-RA

PSME_00019432-RA


Description : (at2g46170 : 192.0) Reticulon family protein; INVOLVED IN: response to karrikin; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT3G61560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 348.0) & (original description: no original description)


Gene families : OG_42_0000160 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000160_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00019432-RA
Cluster HCCA clusters: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
A4A49_10852 No alias reticulon-like protein b9 0.03 Orthogroups_2024-Update
A4A49_13570 No alias reticulon-like protein b9 0.04 Orthogroups_2024-Update
A4A49_27853 No alias reticulon-like protein b9 0.05 Orthogroups_2024-Update
Solyc03g119190 No alias Reticulon-like protein (AHRD V3.3 *** K4BM68_SOLLC) 0.03 Orthogroups_2024-Update
Sopen05g004640 No alias Reticulon 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP Predicted GO
BP GO:0006308 DNA catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003388 Reticulon 52 204
No external refs found!