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  5. PSME_00019559-RA

PSME_00019559-RA


Description : (at4g13710 : 600.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT3G24230.1). & (p40973|pel_lillo : 418.0) Pectate lyase precursor (EC 4.2.2.2) - Lilium longiflorum (Trumpet lily) & (reliability: 1200.0) & (original description: no original description)


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00019559-RA
Cluster HCCA clusters: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
407495 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_12542 No alias pectate lyase 0.02 Orthogroups_2024-Update
A4A49_35755 No alias putative pectate lyase p59 0.02 Orthogroups_2024-Update
At1g04680 No alias Pectate lyase [Source:UniProtKB/TrEMBL;Acc:A0A178W464] 0.04 Orthogroups_2024-Update
At3g07010 No alias Probable pectate lyase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Z8] 0.03 Orthogroups_2024-Update
Brara.H03034.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.K01484.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
MA_101171g0010 No alias (at1g67750 : 487.0) Pectate lyase family protein;... 0.04 Orthogroups_2024-Update
MA_10426822g0020 No alias (at1g67750 : 481.0) Pectate lyase family protein;... 0.05 Orthogroups_2024-Update
MA_10437227g0020 No alias (at4g13710 : 576.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
MA_91467g0010 No alias (at4g24780 : 570.0) Pectin lyase-like superfamily... 0.05 Orthogroups_2024-Update
MA_97947g0010 No alias (at1g67750 : 510.0) Pectate lyase family protein;... 0.05 Orthogroups_2024-Update
Mp8g00770.1 No alias pectate lyase 0.03 Orthogroups_2024-Update
PSME_00023843-RA No alias (at4g13710 : 610.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00041064-RA No alias (at1g67750 : 595.0) Pectate lyase family protein;... 0.08 Orthogroups_2024-Update
Potri.001G052300 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.003G175900 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s173_162V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Pp1s409_2V6 No alias pectate lyase 0.04 Orthogroups_2024-Update
Pp1s92_84V6 No alias F12A21.12; pectate lyase family protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Solyc03g111690 No alias Pectate lyase family protein (AHRD V3.3 *** AT1G67750.1) 0.03 Orthogroups_2024-Update
Sopen09g024960 No alias Pectate lyase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 167 351
No external refs found!