PSME_00019563-RA

Description : (at3g54420 : 211.0) encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.; homolog of carrot EP3-3 chitinase (EP3); FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2660 Blast hits to 2432 proteins in 504 species: Archae - 0; Bacteria - 547; Metazoa - 34; Fungi - 178; Plants - 1776; Viruses - 22; Other Eukaryotes - 103 (source: NCBI BLink). & (p42820|chip_betvu : 209.0) Acidic endochitinase SP2 precursor (EC 3.2.1.14) - Beta vulgaris (Sugar beet) & (reliability: 422.0) & (original description: no original description)

Gene families : OG_42_0000525 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000525_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00019563-RA
Cluster	HCCA clusters: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
426710	No alias	Chitinase family protein	0.04	Orthogroups_2024-Update
A4A49_35699	No alias	endochitinase ep3	0.06	Orthogroups_2024-Update
At2g43570	No alias	CHI [Source:UniProtKB/TrEMBL;Acc:A0A178W3M3]	0.05	Orthogroups_2024-Update
Bradi3g48230	No alias	homolog of carrot EP3-3 chitinase	0.03	Orthogroups_2024-Update
Bradi5g14430	No alias	homolog of carrot EP3-3 chitinase	0.05	Orthogroups_2024-Update
Brara.C02214.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Brara.E00903.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
GRMZM2G129189	No alias	homolog of carrot EP3-3 chitinase	0.04	Orthogroups_2024-Update
HORVU2Hr1G085280.3	No alias	Unknown function	0.03	Orthogroups_2024-Update
MA_10430424g0010	No alias	(p29022\|chia_maize : 207.0) Endochitinase A precursor...	0.06	Orthogroups_2024-Update
MA_10431378g0010	No alias	(at3g54420 : 211.0) encodes an EP3 chitinase that is...	0.03	Orthogroups_2024-Update
MA_10435326g0010	No alias	(at3g54420 : 247.0) encodes an EP3 chitinase that is...	0.03	Orthogroups_2024-Update
MA_170598g0010	No alias	(at2g43590 : 172.0) Chitinase family protein; FUNCTIONS...	0.03	Orthogroups_2024-Update
MA_191308g0010	No alias	(at3g54420 : 235.0) encodes an EP3 chitinase that is...	0.04	Orthogroups_2024-Update
MA_295712g0010	No alias	(at3g54420 : 239.0) encodes an EP3 chitinase that is...	0.07	Orthogroups_2024-Update
MA_36141g0010	No alias	(at3g54420 : 245.0) encodes an EP3 chitinase that is...	0.08	Orthogroups_2024-Update
MA_44734g0010	No alias	(p29022\|chia_maize : 203.0) Endochitinase A precursor...	0.04	Orthogroups_2024-Update
Mp4g23630.1	No alias	no description available(sp\|q949h3\|chi1_hevbr : 199.0)	0.02	Orthogroups_2024-Update
PSME_00018393-RA	No alias	(at3g54420 : 241.0) encodes an EP3 chitinase that is...	0.04	Orthogroups_2024-Update
PSME_00030535-RA	No alias	(at3g54420 : 248.0) encodes an EP3 chitinase that is...	0.06	Orthogroups_2024-Update
PSME_00036436-RA	No alias	(at3g54420 : 249.0) encodes an EP3 chitinase that is...	0.07	Orthogroups_2024-Update
PSME_00037516-RA	No alias	(at3g54420 : 211.0) encodes an EP3 chitinase that is...	0.07	Orthogroups_2024-Update
PSME_00047416-RA	No alias	(p29022\|chia_maize : 241.0) Endochitinase A precursor...	0.06	Orthogroups_2024-Update
PSME_00052222-RA	No alias	(at3g54420 : 236.0) encodes an EP3 chitinase that is...	0.04	Orthogroups_2024-Update
Potri.013G125000	No alias	homolog of carrot EP3-3 chitinase	0.03	Orthogroups_2024-Update
Pp1s184_140V6	No alias	class iv chitinase	0.02	Orthogroups_2024-Update
Pp1s197_7V6	No alias	class i chitinase	0.02	Orthogroups_2024-Update
Pp1s197_8V6	No alias	chitinase	0.04	Orthogroups_2024-Update
Seita.7G150500.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Seita.7G150600.1	No alias	Unknown function	0.05	Orthogroups_2024-Update
Seita.7G150700.1	No alias	Unknown function	0.06	Orthogroups_2024-Update
Sobic.006G132500.1	No alias	Unknown function	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004568	chitinase activity	IEA	InterProScan predictions
BP	GO:0006022	aminoglycan metabolic process	None	Extended
BP	GO:0006026	aminoglycan catabolic process	None	Extended
BP	GO:0006030	chitin metabolic process	None	Extended
BP	GO:0006032	chitin catabolic process	IEA	InterProScan predictions
BP	GO:0006040	amino sugar metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0016998	cell wall macromolecule catabolic process	IEA	InterProScan predictions
BP	GO:0017144	drug metabolic process	None	Extended
BP	GO:0042737	drug catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046348	amino sugar catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901071	glucosamine-containing compound metabolic process	None	Extended
BP	GO:1901072	glucosamine-containing compound catabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901136	carbohydrate derivative catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predicted GO
MF	GO:0004556	alpha-amylase activity	IEP	Predicted GO
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006629	lipid metabolic process	IEP	Predicted GO
MF	GO:0008061	chitin binding	IEP	Predicted GO
BP	GO:0009889	regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0010468	regulation of gene expression	IEP	Predicted GO
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Predicted GO
MF	GO:0015298	solute:cation antiporter activity	IEP	Predicted GO
MF	GO:0015299	solute:proton antiporter activity	IEP	Predicted GO
MF	GO:0016160	amylase activity	IEP	Predicted GO
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0031323	regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Predicted GO
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051252	regulation of RNA metabolic process	IEP	Predicted GO
BP	GO:0080090	regulation of primary metabolic process	IEP	Predicted GO
MF	GO:0140110	transcription regulator activity	IEP	Predicted GO
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Predicted GO
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000726	Glyco_hydro_19_cat	37	242

External Links

No external refs found!

PSME_00019563-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation