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  5. PSME_00019824-RA

PSME_00019824-RA


Description : (at1g67750 : 587.0) Pectate lyase family protein; FUNCTIONS IN: pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G63180.1); Has 1739 Blast hits to 1731 proteins in 272 species: Archae - 0; Bacteria - 767; Metazoa - 0; Fungi - 258; Plants - 701; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). & (p40973|pel_lillo : 412.0) Pectate lyase precursor (EC 4.2.2.2) - Lilium longiflorum (Trumpet lily) & (reliability: 1174.0) & (original description: no original description)


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00019824-RA
Cluster HCCA clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
407495 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_12542 No alias pectate lyase 0.05 Orthogroups_2024-Update
A4A49_25976 No alias putative pectate lyase p59 0.02 Orthogroups_2024-Update
A4A49_25977 No alias pectate lyase 0.02 Orthogroups_2024-Update
A4A49_31246 No alias putative pectate lyase 12 0.03 Orthogroups_2024-Update
A4A49_35525 No alias putative pectate lyase 16 0.03 Orthogroups_2024-Update
At1g14420 No alias Probable pectate lyase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S2] 0.03 Orthogroups_2024-Update
At5g48900 No alias Probable pectate lyase 20... 0.04 Orthogroups_2024-Update
Brara.D00702.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Brara.G02558.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.04 Orthogroups_2024-Update
Brara.K01484.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Glyma.02G020600 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
Glyma.15G110500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G011200 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G012200 No alias Pectate lyase family protein 0.02 Orthogroups_2024-Update
Glyma.18G255900 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
MA_101171g0010 No alias (at1g67750 : 487.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
MA_10433252g0010 No alias (at3g24670 : 194.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_97947g0010 No alias (at1g67750 : 510.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
PSME_00005706-RA No alias (at3g07010 : 518.0) Pectin lyase-like superfamily... 0.06 Orthogroups_2024-Update
PSME_00012211-RA No alias (at5g63180 : 515.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00014422-RA No alias (at4g24780 : 543.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00017512-RA No alias (at4g24780 : 545.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00017513-RA No alias (at4g24780 : 555.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00023845-RA No alias (at4g13710 : 608.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00035455-RA No alias (at1g67750 : 301.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
Potri.003G175900 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.011G008100 No alias root hair specific 14 0.03 Orthogroups_2024-Update
Pp1s173_162V6 No alias pectate lyase 0.03 Orthogroups_2024-Update
Pp1s409_2V6 No alias pectate lyase 0.03 Orthogroups_2024-Update
Pp1s84_82V6 No alias pectate lyase 0.04 Orthogroups_2024-Update
Pp1s92_84V6 No alias F12A21.12; pectate lyase family protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Sobic.006G014400.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Sopen01g006390 No alias Pectate lyase 0.02 Orthogroups_2024-Update
Sopen02g032420 No alias Pectate lyase 0.02 Orthogroups_2024-Update
Sopen09g024960 No alias Pectate lyase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 169 354
No external refs found!