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  5. PSME_00019875-RA

PSME_00019875-RA


Description : (at2g07050 : 308.0) Involved in the biosynthesis of brassinosteroids. Catalyzes the reaction from epoxysqualene to cycloartenol.; cycloartenol synthase 1 (CAS1); FUNCTIONS IN: cycloartenol synthase activity; INVOLVED IN: pentacyclic triterpenoid biosynthetic process, thylakoid membrane organization, pollen development; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: lanosterol synthase 1 (TAIR:AT3G45130.1); Has 2063 Blast hits to 1929 proteins in 563 species: Archae - 2; Bacteria - 902; Metazoa - 86; Fungi - 243; Plants - 616; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink). & (reliability: 616.0) & (original description: no original description)


Gene families : OG_42_0000371 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000371_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00019875-RA

Target Alias Description ECC score Gene Family Method Actions
At1g78950 No alias Terpenoid cyclases family protein [Source:TAIR;Acc:AT1G78950] 0.04 Orthogroups_2024-Update
At3g45130 No alias Terpene cyclase/mutase family member... 0.02 Orthogroups_2024-Update
At5g48010 No alias Thalianol synthase [Source:UniProtKB/Swiss-Prot;Acc:Q9FI37] 0.02 Orthogroups_2024-Update
Bradi3g22786 No alias cycloartenol synthase 1 0.03 Orthogroups_2024-Update
LOC_Os06g28820 No alias cycloartenol synthase, putative, expressed 0.01 Orthogroups_2024-Update
Potri.006G079200 No alias cycloartenol synthase 1 0.02 Orthogroups_2024-Update
Sopen07g022320 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen12g002450 No alias Prenyltransferase and squalene oxidase repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR032697 SQ_cyclase_N 235 354
IPR032696 SQ_cyclase_C 22 152
IPR032696 SQ_cyclase_C 442 580
No external refs found!