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Description : (at3g26540 : 467.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 45842 Blast hits to 12891 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 81; Fungi - 71; Plants - 45205; Viruses - 0; Other Eukaryotes - 485 (source: NCBI BLink). & (q76c99|rf1_orysa : 136.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 934.0) & (original description: no original description)
Gene families : OG_42_0009881 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009881_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00019892-RA | |
| Cluster | HCCA clusters: Cluster_210 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| HORVU2Hr1G076380.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
| Sobic.006G085900.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 278 | 302 |
| IPR002885 | Pentatricopeptide_repeat | 335 | 361 |
| IPR002885 | Pentatricopeptide_repeat | 69 | 97 |
| IPR002885 | Pentatricopeptide_repeat | 610 | 633 |
| IPR002885 | Pentatricopeptide_repeat | 408 | 433 |
| IPR002885 | Pentatricopeptide_repeat | 175 | 201 |
| IPR002885 | Pentatricopeptide_repeat | 304 | 334 |
| IPR002885 | Pentatricopeptide_repeat | 509 | 534 |
| IPR002885 | Pentatricopeptide_repeat | 675 | 700 |
| IPR002885 | Pentatricopeptide_repeat | 535 | 581 |
| IPR002885 | Pentatricopeptide_repeat | 434 | 481 |
| IPR002885 | Pentatricopeptide_repeat | 203 | 248 |
| IPR002885 | Pentatricopeptide_repeat | 103 | 138 |
| No external refs found! |