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  5. PSME_00019949-RA

PSME_00019949-RA


Description : (at1g68920 : 206.0) basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: cryptochrome-interacting basic-helix-loop-helix 5 (TAIR:AT1G26260.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 412.0) & (original description: no original description)


Gene families : OG_42_0000125 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000125_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00019949-RA
Cluster HCCA clusters: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
A4A49_08005 No alias transcription factor bhlh48 0.03 Orthogroups_2024-Update
A4A49_20906 No alias transcription factor bhlh79 0.02 Orthogroups_2024-Update
At5g62610 No alias Transcription factor bHLH79... 0.03 Orthogroups_2024-Update
Bradi3g41510 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Brara.B03444.1 No alias regulatory protein (CIB) of blue light perception &... 0.02 Orthogroups_2024-Update
Brara.C01506.1 No alias regulatory protein (CIB) of blue light perception &... 0.03 Orthogroups_2024-Update
Brara.E00275.1 No alias regulatory protein (CIB) of blue light perception &... 0.03 Orthogroups_2024-Update
GRMZM2G092091 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G144275 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G145579 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.17G232285 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
HORVU6Hr1G068980.2 No alias regulatory protein (CIB) of blue light perception &... 0.02 Orthogroups_2024-Update
LOC_Os03g12940 No alias OsFBO13 - F-box and other domain containing protein, expressed 0.02 Orthogroups_2024-Update
PSME_00000014-RA No alias (at1g68920 : 227.0) basic helix-loop-helix (bHLH)... 0.03 Orthogroups_2024-Update
PSME_00020009-RA No alias (at1g68920 : 136.0) basic helix-loop-helix (bHLH)... 0.03 Orthogroups_2024-Update
PSME_00034758-RA No alias (at1g68920 : 116.0) basic helix-loop-helix (bHLH)... 0.03 Orthogroups_2024-Update
PSME_00038483-RA No alias (at1g68920 : 200.0) basic helix-loop-helix (bHLH)... 0.04 Orthogroups_2024-Update
Potri.005G146500 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Pp1s226_51V6 No alias dna binding 0.02 Orthogroups_2024-Update
Pp1s7_37V6 No alias T6L1.10; basic helix-loop-helix (bHLH) family protein... 0.02 Orthogroups_2024-Update
Sobic.001G105000.1 No alias regulatory protein (CIB) of blue light perception &... 0.01 Orthogroups_2024-Update
Sobic.004G267400.1 No alias regulatory protein (CIB) of blue light perception &... 0.02 Orthogroups_2024-Update
Solyc12g098620 No alias bHLH transcription factor 072 0.02 Orthogroups_2024-Update
Sopen12g033380 No alias Helix-loop-helix DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 183 231
No external refs found!