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- PSME_00019983-RA
PSME_00019983-RA
Description : (p07979|gub_nicpl : 267.0) Lichenase precursor (EC 3.2.1.73) (Endo-beta-1,3-1,4 glucanase) - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (at4g16260 : 257.0) Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: defense response to fungus, incompatible interaction, response to salt stress; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 1 (TAIR:AT3G57270.1); Has 2169 Blast hits to 2154 proteins in 141 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 22; Plants - 2121; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). & (reliability: 514.0) & (original description: no original description)
Expression Profile
Attention: This gene has low abundance.
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
| Type | Description | Actions |
| Neighborhood | Pseudotsuga release: PSME_00019983-RA | |
| Cluster | HCCA clusters: Cluster_53 | |
Expression Context Conservation (ECC)
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
| 440863 | No alias | Glycosyl hydrolase family 17 protein | 0.05 | Orthogroups_2024-Update | |
| A4A49_01055 | No alias | glucan endo-1,3-beta-glucosidase, acidic isoform gi9 | 0.02 | Orthogroups_2024-Update | |
| At5g20560 | No alias | Glycosyl hydrolase superfamily protein... | 0.02 | Orthogroups_2024-Update | |
| Bradi2g21142 | No alias | beta-1,3-glucanase 5 | 0.01 | Orthogroups_2024-Update | |
| Brara.G01731.1 | No alias | EC_3.2 glycosylase | 0.03 | Orthogroups_2024-Update | |
| Brara.I03951.1 | No alias | EC_3.2 glycosylase | 0.02 | Orthogroups_2024-Update | |
| Glyma.11G095100 | No alias | Glycosyl hydrolase superfamily protein | 0.02 | Orthogroups_2024-Update | |
| HORVU3Hr1G105290.1 | No alias | EC_3.2 glycosylase | 0.02 | Orthogroups_2024-Update | |
| HORVU3Hr1G105560.1 | No alias | EC_3.2 glycosylase | 0.02 | Orthogroups_2024-Update | |
| HORVU3Hr1G105620.3 | No alias | EC_3.2 glycosylase | 0.02 | Orthogroups_2024-Update | |
| HORVU3Hr1G105630.7 | No alias | EC_3.2 glycosylase | 0.12 | Orthogroups_2024-Update | |
| HORVU3Hr1G106140.3 | No alias | EC_3.2 glycosylase | 0.03 | Orthogroups_2024-Update | |
| Mp2g14720.1 | No alias | Enzyme classification.EC_3 hydrolases.EC_3.2... | 0.03 | Orthogroups_2024-Update | |
| PSME_00010153-RA | No alias | (p15797|e13b_tobac : 286.0) Glucan... | 0.03 | Orthogroups_2024-Update | |
| PSME_00019982-RA | No alias | (p07979|gub_nicpl : 308.0) Lichenase precursor (EC... | 0.03 | Orthogroups_2024-Update | |
| PSME_00023819-RA | No alias | (p52408|e13b_prupe : 305.0) Glucan... | 0.02 | Orthogroups_2024-Update | |
| PSME_00025204-RA | No alias | (at4g16260 : 287.0) Glycosyl hydrolase superfamily... | 0.04 | Orthogroups_2024-Update | |
| PSME_00025205-RA | No alias | (p49237|e13b_maize : 286.0) Glucan... | 0.03 | Orthogroups_2024-Update | |
| PSME_00037375-RA | No alias | (p49237|e13b_maize : 314.0) Glucan... | 0.02 | Orthogroups_2024-Update | |
| PSME_00045678-RA | No alias | (p49237|e13b_maize : 216.0) Glucan... | 0.03 | Orthogroups_2024-Update | |
| PSME_00047569-RA | No alias | (p07979|gub_nicpl : 243.0) Lichenase precursor (EC... | 0.02 | Orthogroups_2024-Update | |
| Sobic.003G422100.1 | No alias | EC_3.2 glycosylase | 0.02 | Orthogroups_2024-Update | |
| Sopen01g026150 | No alias | Glycosyl hydrolases family 17 | 0.01 | Orthogroups_2024-Update | |
Functional Annotation
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003824 | catalytic activity | None | Extended |
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEA | InterProScan predictions |
| BP | GO:0005975 | carbohydrate metabolic process | IEA | InterProScan predictions |
| BP | GO:0008150 | biological_process | None | Extended |
| BP | GO:0008152 | metabolic process | None | Extended |
| MF | GO:0016787 | hydrolase activity | None | Extended |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | None | Extended |
| BP | GO:0044238 | primary metabolic process | None | Extended |
| BP | GO:0071704 | organic substance metabolic process | None | Extended |
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0008324 | cation transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015077 | monovalent inorganic cation transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015078 | proton transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0015297 | antiporter activity | IEP | Predicted GO |
| MF | GO:0015298 | solute:cation antiporter activity | IEP | Predicted GO |
| MF | GO:0015299 | solute:proton antiporter activity | IEP | Predicted GO |
| MF | GO:0022890 | inorganic cation transmembrane transporter activity | IEP | Predicted GO |
| MF | GO:0048037 | cofactor binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
| IPR000490 | Glyco_hydro_17 | 178 | 328 |
