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  5. PSME_00019993-RA

PSME_00019993-RA


Description : (at1g32750 : 182.0) This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation.; HAF01; FUNCTIONS IN: histone acetyltransferase activity, DNA binding; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TAFII-230 TBP-binding (InterPro:IPR009067), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the TAFII250 family 2 (TAIR:AT3G19040.1); Has 22854 Blast hits to 14376 proteins in 1001 species: Archae - 24; Bacteria - 596; Metazoa - 11292; Fungi - 2677; Plants - 2799; Viruses - 159; Other Eukaryotes - 5307 (source: NCBI BLink). & (reliability: 364.0) & (original description: no original description)


Gene families : OG_42_0004219 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004219_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00019993-RA
Cluster HCCA clusters: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
HORVU7Hr1G115120.44 No alias component *(HAF/TAF1) of SAGA transcription co-activator... 0.04 Orthogroups_2024-Update
LOC_Os06g43790 No alias transcription initiation factor TFIID subunit 1,... 0.02 Orthogroups_2024-Update
Mp5g22790.1 No alias component HAF/TAF1 of SAGA transcription co-activator... 0.02 Orthogroups_2024-Update
Sobic.010G206900.1 No alias component *(HAF/TAF1) of TFIId basal transcription... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001487 Bromodomain 503 580
No external refs found!