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  5. PSME_00020009-RA

PSME_00020009-RA


Description : (at1g68920 : 136.0) basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: cryptochrome-interacting basic-helix-loop-helix 5 (TAIR:AT1G26260.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 272.0) & (original description: no original description)


Gene families : OG_42_0000125 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000125_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00020009-RA
Cluster HCCA clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
A4A49_20906 No alias transcription factor bhlh79 0.03 Orthogroups_2024-Update
Bradi3g41510 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Brara.C01506.1 No alias regulatory protein (CIB) of blue light perception &... 0.02 Orthogroups_2024-Update
Glyma.05G031800 No alias BIG PETAL P 0.03 Orthogroups_2024-Update
LOC_Os03g58830 No alias BEE 1, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g28280 No alias BEE 3, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00019655-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00019949-RA No alias (at1g68920 : 206.0) basic helix-loop-helix (bHLH)... 0.03 Orthogroups_2024-Update
Potri.014G148900 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Sobic.001G105000.1 No alias regulatory protein (CIB) of blue light perception &... 0.03 Orthogroups_2024-Update
Sobic.004G267400.1 No alias regulatory protein (CIB) of blue light perception &... 0.03 Orthogroups_2024-Update
Solyc06g072520 No alias bHLH transcription factor GBOF-1 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0005347 ATP transmembrane transporter activity IEP Predicted GO
MF GO:0005471 ATP:ADP antiporter activity IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006862 nucleotide transport IEP Predicted GO
MF GO:0008514 organic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015215 nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015217 ADP transmembrane transporter activity IEP Predicted GO
MF GO:0015301 anion:anion antiporter activity IEP Predicted GO
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Predicted GO
BP GO:0015748 organophosphate ester transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0099516 ion antiporter activity IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!