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PSME_00020014-RA


Description : (at5g09260 : 164.0) vacuolar protein sorting-associated protein 20.2 (VPS20.2); INVOLVED IN: vesicle-mediated transport, N-terminal protein myristoylation; LOCATED IN: ESCRT III complex, plasma membrane; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G63880.1); Has 1828 Blast hits to 1807 proteins in 295 species: Archae - 35; Bacteria - 99; Metazoa - 731; Fungi - 367; Plants - 251; Viruses - 5; Other Eukaryotes - 340 (source: NCBI BLink). & (reliability: 320.0) & (original description: no original description)


Gene families : OG_42_0004311 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004311_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00020014-RA
Cluster HCCA clusters: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
HORVU6Hr1G053830.2 No alias component *(VPS20) of ESCRT-III complex 0.02 Orthogroups_2024-Update
Sobic.004G203100.1 No alias component *(VPS20) of ESCRT-III complex 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
CC GO:0005779 integral component of peroxisomal membrane IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Predicted GO
CC GO:0031300 intrinsic component of organelle membrane IEP Predicted GO
CC GO:0031301 integral component of organelle membrane IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
InterPro domains Description Start Stop
IPR005024 Snf7_fam 2 143
No external refs found!