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  5. PSME_00020201-RA

PSME_00020201-RA


Description : (at1g20880 : 201.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G76460.1). & (reliability: 402.0) & (original description: no original description)


Gene families : OG_42_0000483 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000483_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00020201-RA
Cluster HCCA clusters: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
100311 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
At2g46780 No alias At2g46780 [Source:UniProtKB/TrEMBL;Acc:Q501B0] 0.03 Orthogroups_2024-Update
Bradi3g58710 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Brara.D00442.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G02114.1 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os02g48340 No alias RNA recognition motif containing protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00018643-RA No alias (at1g20880 : 184.0) RNA-binding (RRM/RBD/RNP motifs)... 0.03 Orthogroups_2024-Update
Sopen11g020040 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0015399 primary active transmembrane transporter activity IEP Predicted GO
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Predicted GO
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 28 83
No external refs found!