1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00020247-RA

PSME_00020247-RA


Description : (at3g47470 : 395.0) Encodes a chlorophyll a/b-binding protein that is more similar to the PSI Cab proteins than the PSII cab proteins. The predicted protein is about 20 amino acids shorter than most known Cab proteins.; light-harvesting chlorophyll-protein complex I subunit A4 (LHCA4); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to karrikin, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1); Has 2336 Blast hits to 2249 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1967; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink). & (p13869|cb12_pethy : 240.0) Chlorophyll a-b binding protein, chloroplast precursor (LHCI type II CAB) - Petunia hybrida (Petunia) & (reliability: 790.0) & (original description: no original description)


Gene families : OG_42_0000070 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000070_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00020247-RA
Cluster HCCA clusters: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
444370 No alias light harvesting complex of photosystem II 5 0.03 Orthogroups_2024-Update
446130 No alias photosystem I light harvesting complex gene 2 0.03 Orthogroups_2024-Update
A4A49_03871 No alias chlorophyll a-b binding protein 36, chloroplastic 0.03 Orthogroups_2024-Update
A4A49_12650 No alias chlorophyll a-b binding protein 6a, chloroplastic 0.03 Orthogroups_2024-Update
A4A49_14365 No alias chlorophyll a-b binding protein 21, chloroplastic 0.06 Orthogroups_2024-Update
A4A49_24464 No alias chlorophyll a-b binding protein 36, chloroplastic 0.04 Orthogroups_2024-Update
A4A49_25385 No alias chlorophyll a-b binding protein cp26, chloroplastic 0.03 Orthogroups_2024-Update
A4A49_33198 No alias chlorophyll a-b binding protein p4, chloroplastic 0.04 Orthogroups_2024-Update
A4A49_64136 No alias chlorophyll a-b binding protein 13, chloroplastic 0.03 Orthogroups_2024-Update
At1g29910 No alias Chlorophyll a-b binding protein 3, chloroplastic... 0.03 Orthogroups_2024-Update
At3g54890 No alias Chlorophyll a-b binding protein, chloroplastic... 0.04 Orthogroups_2024-Update
Bradi2g16290 No alias photosystem II light harvesting complex gene B1B2 0.02 Orthogroups_2024-Update
Bradi4g31257 No alias photosystem I light harvesting complex gene 6 0.04 Orthogroups_2024-Update
Brara.B02273.1 No alias component *(LHCq) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.C04035.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.E00980.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E00981.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.H01921.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.K00763.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Cre06.g272650 No alias photosystem I light harvesting complex gene 5 0.02 Orthogroups_2024-Update
Cre06.g278213 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.02 Orthogroups_2024-Update
Cre06.g283050 No alias photosystem I light harvesting complex gene 1 0.02 Orthogroups_2024-Update
Cre06.g285250 No alias photosystem II light harvesting complex gene 2.1 0.02 Orthogroups_2024-Update
Cre07.g344950 No alias photosystem I light harvesting complex gene 5 0.02 Orthogroups_2024-Update
Cre10.g425900 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.02 Orthogroups_2024-Update
Cre10.g452050 No alias light-harvesting chlorophyll-protein complex I subunit A4 0.02 Orthogroups_2024-Update
Cre12.g508750 No alias photosystem I light harvesting complex gene 6 0.02 Orthogroups_2024-Update
Cre16.g673650 No alias light harvesting complex of photosystem II 5 0.02 Orthogroups_2024-Update
Cre16.g687900 No alias photosystem I light harvesting complex gene 5 0.02 Orthogroups_2024-Update
Glyma.02G080800 No alias light-harvesting chlorophyll-protein complex II subunit B1 0.03 Orthogroups_2024-Update
Glyma.03G262300 No alias photosystem I light harvesting complex gene 2 0.04 Orthogroups_2024-Update
Glyma.09G154700 No alias light harvesting complex of photosystem II 5 0.03 Orthogroups_2024-Update
Glyma.16G165200 No alias light-harvesting chlorophyll-protein complex II subunit B1 0.03 Orthogroups_2024-Update
Glyma.16G165500 No alias light-harvesting chlorophyll-protein complex II subunit B1 0.03 Orthogroups_2024-Update
Glyma.16G165800 No alias light-harvesting chlorophyll-protein complex II subunit B1 0.03 Orthogroups_2024-Update
HORVU4Hr1G015260.2 No alias component *(LHCb5) of LHC-II complex 0.03 Orthogroups_2024-Update
Kfl00104_0350 kfl00104_0350_v1.1 (at4g10340 : 325.0) photosystem II encoding the... 0.01 Orthogroups_2024-Update
Kfl00564_0030 kfl00564_0030_v1.1 (p13869|cb12_pethy : 291.0) Chlorophyll a-b binding... 0.01 Orthogroups_2024-Update
LOC_Os07g37550 No alias chlorophyll A-B binding protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g38960 No alias chlorophyll A-B binding protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_10431493g0010 No alias (at3g54890 : 355.0) Encodes a component of the light... 0.04 Orthogroups_2024-Update
MA_131587g0010 No alias (p15194|cb2b_pinsy : 453.0) Chlorophyll a-b binding... 0.04 Orthogroups_2024-Update
MA_176279g0010 No alias (at4g10340 : 387.0) photosystem II encoding the... 0.05 Orthogroups_2024-Update
MA_65346g0010 No alias (at3g47470 : 317.0) Encodes a chlorophyll a/b-binding... 0.04 Orthogroups_2024-Update
MA_97315g0010 No alias (p15193|cb2a_pinsy : 556.0) Chlorophyll a-b binding... 0.05 Orthogroups_2024-Update
Mp2g15420.1 No alias component LHCa1 of LHC-I complex 0.02 Orthogroups_2024-Update
Mp3g07840.1 No alias component LHCa4 of LHC-I complex 0.02 Orthogroups_2024-Update
Mp7g06790.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Orthogroups_2024-Update
Potri.006G139600 No alias photosystem I light harvesting complex gene 6 0.03 Orthogroups_2024-Update
Pp1s158_109V6 No alias chlorophyll a-b binding protein 6a 0.02 Orthogroups_2024-Update
Pp1s182_81V6 No alias chlorophyll a b binding 0.03 Orthogroups_2024-Update
Pp1s19_13V6 No alias light-harvesting complex ii protein lhcb2 0.02 Orthogroups_2024-Update
Pp1s252_28V6 No alias chlorophyll a-b binding protein of lhcii 0.02 Orthogroups_2024-Update
Pp1s254_3V6 No alias light-harvesting complex ii protein lhcb3 0.02 Orthogroups_2024-Update
Pp1s256_10V6 No alias chlorophyll a b binding 0.03 Orthogroups_2024-Update
Pp1s330_37V6 No alias chlorophyll a-b binding protein 0.02 Orthogroups_2024-Update
Pp1s628_7V6 No alias light-harvesting complex ii protein lhcb5 0.03 Orthogroups_2024-Update
Pp1s6_312V6 No alias light-harvesting complex ii protein lhcb5 0.02 Orthogroups_2024-Update
Pp1s76_196V6 No alias chlorophyll a b binding 0.02 Orthogroups_2024-Update
Seita.2G352900.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Sobic.002G339200.2 No alias component *(LHCb1/2/3) of LHC-II complex 0.02 Orthogroups_2024-Update
Sobic.003G209800.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Sobic.003G209900.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.03 Orthogroups_2024-Update
Sobic.007G136900.1 No alias component *(LHCa4) of LHC-I complex 0.03 Orthogroups_2024-Update
Sobic.009G234600.1 No alias component *(LHCb1/2/3) of LHC-II complex 0.04 Orthogroups_2024-Update
Solyc02g070940 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.05 Orthogroups_2024-Update
Solyc02g070950 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.05 Orthogroups_2024-Update
Solyc02g070970 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.04 Orthogroups_2024-Update
Solyc02g070980 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.05 Orthogroups_2024-Update
Solyc02g070990 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.05 Orthogroups_2024-Update
Solyc02g071000 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.05 Orthogroups_2024-Update
Solyc02g071010 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.05 Orthogroups_2024-Update
Solyc02g071030 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.05 Orthogroups_2024-Update
Solyc03g005770 No alias chlorophyll a/b-binding protein 0.04 Orthogroups_2024-Update
Solyc03g005780 No alias chlorophyll a/b-binding protein Cab-3C 0.04 Orthogroups_2024-Update
Solyc03g005790 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.04 Orthogroups_2024-Update
Solyc03g115900 No alias chlorophyll a-b binding protein CAB11 0.05 Orthogroups_2024-Update
Solyc05g056050 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.05 Orthogroups_2024-Update
Solyc06g063370 No alias Type I (26 kD) CP29 polypeptide 0.03 Orthogroups_2024-Update
Solyc06g069730 No alias chlorophyll a-b binding protein Cab12 0.04 Orthogroups_2024-Update
Solyc07g047850 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.03 Orthogroups_2024-Update
Solyc07g063600 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.05 Orthogroups_2024-Update
Solyc08g067320 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.05 Orthogroups_2024-Update
Solyc08g067330 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.05 Orthogroups_2024-Update
Solyc10g006230 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.04 Orthogroups_2024-Update
Solyc12g006140 No alias Cab-5 gene encoding chlorophyll a/b-binding protein 0.04 Orthogroups_2024-Update
Solyc12g011450 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.05 Orthogroups_2024-Update
Sopen02g020080 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen03g034880 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen05g034480 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen06g022840 No alias Chlorophyll A-B binding protein 0.02 Orthogroups_2024-Update
Sopen07g024290 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Predicted GO
BP GO:0001932 regulation of protein phosphorylation IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
BP GO:0006308 DNA catabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
BP GO:0019220 regulation of phosphate metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
MF GO:0019900 kinase binding IEP Predicted GO
MF GO:0019901 protein kinase binding IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031399 regulation of protein modification process IEP Predicted GO
BP GO:0032268 regulation of cellular protein metabolic process IEP Predicted GO
BP GO:0032780 negative regulation of ATPase activity IEP Predicted GO
MF GO:0042030 ATPase inhibitor activity IEP Predicted GO
BP GO:0042325 regulation of phosphorylation IEP Predicted GO
BP GO:0043086 negative regulation of catalytic activity IEP Predicted GO
BP GO:0043462 regulation of ATPase activity IEP Predicted GO
BP GO:0043549 regulation of kinase activity IEP Predicted GO
BP GO:0044092 negative regulation of molecular function IEP Predicted GO
BP GO:0045859 regulation of protein kinase activity IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051174 regulation of phosphorus metabolic process IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
BP GO:0051336 regulation of hydrolase activity IEP Predicted GO
BP GO:0051338 regulation of transferase activity IEP Predicted GO
BP GO:0051346 negative regulation of hydrolase activity IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
MF GO:0051743 red chlorophyll catabolite reductase activity IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 62 221
No external refs found!