PSME_00020295-RA

Description : (at5g64950 : 119.0) Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT5G07900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 238.0) & (original description: no original description)

Gene families : OG_42_0000078 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000078_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00020295-RA
Cluster	HCCA clusters: Cluster_95

Target	Alias	Description	ECC score	Gene Family Method
Bradi4g20547	No alias	Mitochondrial transcription termination factor family protein	0.03	Orthogroups_2024-Update
Glyma.15G095800	No alias	Mitochondrial transcription termination factor family protein	0.03	Orthogroups_2024-Update
Glyma.18G112300	No alias	Mitochondrial transcription termination factor family protein	0.03	Orthogroups_2024-Update
HORVU5Hr1G109600.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
HORVU6Hr1G005510.2	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
HORVU7Hr1G037730.1	No alias	mTERF-type transcription factor	0.02	Orthogroups_2024-Update
LOC_Os11g10040	No alias	mTERF family protein, expressed	0.02	Orthogroups_2024-Update
MA_593288g0010	No alias	(at1g79220 : 104.0) Mitochondrial transcription...	0.04	Orthogroups_2024-Update
MA_92135g0010	No alias	(at5g64950 : 117.0) Mitochondrial transcription...	0.04	Orthogroups_2024-Update
PSME_00020267-RA	No alias	(at1g79220 : 81.6) Mitochondrial transcription...	0.04	Orthogroups_2024-Update
PSME_00032600-RA	No alias	(at5g64950 : 90.5) Mitochondrial transcription...	0.03	Orthogroups_2024-Update
PSME_00053051-RA	No alias	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update
PSME_00056620-RA	No alias	(at1g79220 : 139.0) Mitochondrial transcription...	0.03	Orthogroups_2024-Update
Sobic.004G235300.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.004G235700.1	No alias	mTERF-type transcription factor	0.03	Orthogroups_2024-Update
Sopen02g017090	No alias	mTERF	0.03	Orthogroups_2024-Update
Sopen04g028720	No alias	mTERF	0.02	Orthogroups_2024-Update
evm.model.tig00020723.33	No alias	no hits & (original description: no original description)	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Predicted GO
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003690	MTERF	252	336
IPR003690	MTERF	68	192

External Links

No external refs found!

PSME_00020295-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation