PSME_00020365-RA


Description : (at2g29120 : 505.0) member of Putative ligand-gated ion channel subunit family; glutamate receptor 2.7 (GLR2.7); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: vacuole; EXPRESSED IN: stem, cotyledon, leaf whorl, leaf, stamen; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 2.8 (TAIR:AT2G29110.1); Has 5217 Blast hits to 5121 proteins in 549 species: Archae - 76; Bacteria - 910; Metazoa - 3278; Fungi - 0; Plants - 643; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink). & (q7xp59|glr31_orysa : 491.0) Glutamate receptor 3.1 precursor (Ligand-gated ion channel 3.1) - Oryza sativa (Rice) & (reliability: 1010.0) & (original description: no original description)


Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00020365-RA
Cluster HCCA clusters: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
At3g04110 No alias Glutamate receptor 1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8W7] 0.02 Orthogroups_2024-Update
At5g48400 No alias Glutamate receptor 1.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV72] 0.03 Orthogroups_2024-Update
Bradi3g53690 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
Bradi4g30840 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
Bradi4g30860 No alias glutamate receptor 2.7 0.05 Orthogroups_2024-Update
Brara.B00398.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Brara.E01369.1 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
Brara.F03008.1 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
Brara.G00725.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Glyma.09G197400 No alias glutamate receptor 3.3 0.02 Orthogroups_2024-Update
Glyma.13G165100 No alias glutamate receptor 3.4 0.03 Orthogroups_2024-Update
Glyma.13G233400 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
HORVU5Hr1G010420.23 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
HORVU7Hr1G031400.1 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
MA_958834g0010 No alias (at4g35290 : 358.0) Encodes a putative glutamate... 0.03 Orthogroups_2024-Update
PSME_00001096-RA No alias (at2g29120 : 535.0) member of Putative ligand-gated ion... 0.01 Orthogroups_2024-Update
PSME_00001098-RA No alias (at2g29120 : 637.0) member of Putative ligand-gated ion... 0.05 Orthogroups_2024-Update
PSME_00001291-RA No alias (at4g35290 : 534.0) Encodes a putative glutamate... 0.06 Orthogroups_2024-Update
PSME_00001292-RA No alias (at4g35290 : 567.0) Encodes a putative glutamate... 0.06 Orthogroups_2024-Update
PSME_00007782-RA No alias (at2g17260 : 247.0) Encodes a glutamate receptor.... 0.03 Orthogroups_2024-Update
PSME_00009648-RA No alias (at4g35290 : 566.0) Encodes a putative glutamate... 0.03 Orthogroups_2024-Update
PSME_00021963-RA No alias (at1g05200 : 294.0) member of Putative ligand-gated ion... 0.02 Orthogroups_2024-Update
PSME_00027643-RA No alias (at2g29120 : 565.0) member of Putative ligand-gated ion... 0.04 Orthogroups_2024-Update
PSME_00027644-RA No alias (at2g29120 : 490.0) member of Putative ligand-gated ion... 0.01 Orthogroups_2024-Update
PSME_00032127-RA No alias (at4g35290 : 436.0) Encodes a putative glutamate... 0.04 Orthogroups_2024-Update
PSME_00040281-RA No alias (at2g29120 : 550.0) member of Putative ligand-gated ion... 0.01 Orthogroups_2024-Update
Potri.018G011800 No alias glutamate receptor 2.8 0.03 Orthogroups_2024-Update
Seita.1G009400.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Sobic.002G208301.1 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
Sobic.002G208700.1 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
Sopen06g022620 No alias Receptor family ligand binding region 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004970 ionotropic glutamate receptor activity IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006855 drug transmembrane transport IEP Predicted GO
BP GO:0006873 cellular ion homeostasis IEP Predicted GO
BP GO:0006875 cellular metal ion homeostasis IEP Predicted GO
BP GO:0006879 cellular iron ion homeostasis IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008199 ferric iron binding IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
BP GO:0030003 cellular cation homeostasis IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0046916 cellular transition metal ion homeostasis IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0048878 chemical homeostasis IEP Predicted GO
BP GO:0050801 ion homeostasis IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0055065 metal ion homeostasis IEP Predicted GO
BP GO:0055072 iron ion homeostasis IEP Predicted GO
BP GO:0055076 transition metal ion homeostasis IEP Predicted GO
BP GO:0055080 cation homeostasis IEP Predicted GO
BP GO:0055082 cellular chemical homeostasis IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0098771 inorganic ion homeostasis IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
No alias
InterPro domains Description Start Stop
IPR001828 ANF_lig-bd_rcpt 791 854
IPR001828 ANF_lig-bd_rcpt 39 373
IPR001638 Solute-binding_3/MltF_N 848 1084
IPR001320 Iontro_rcpt 574 677
IPR001638 Solute-binding_3/MltF_N 473 731
IPR001320 Iontro_rcpt 1085 1115
No external refs found!