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  5. Solyc02g069270

Solyc02g069270


Description : Argonaute 2b


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g069270
Cluster HCCA clusters: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G347402 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
Glyma.09G167100 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 Orthogroups_2024-Update
MA_10427005g0010 No alias (at1g69440 : 460.0) Encodes ARGONAUTE7, a member of the... 0.02 Orthogroups_2024-Update
Seita.1G378700.1 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 Orthogroups_2024-Update
Seita.7G201100.1 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 Orthogroups_2024-Update
Solyc09g082830 No alias Argonaute 10a 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR014811 ArgoL1 305 350
IPR032474 Argonaute_N 178 295
IPR003100 PAZ_dom 363 480
IPR032472 ArgoL2 518 543
IPR003165 Piwi 648 939
No external refs found!