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  5. PSME_00020471-RA

PSME_00020471-RA


Description : (q9m3v8|rs6_aspof : 393.0) 40S ribosomal protein S6 - Asparagus officinalis (Garden asparagus) & (at5g10360 : 381.0) RPS6A and RPS6B are fully redundant and essential during gametogenesis.; embryo defective 3010 (EMB3010); CONTAINS InterPro DOMAIN/s: Ribosomal protein S6e (InterPro:IPR001377), Ribosomal protein S6e, conserved site (InterPro:IPR018282); BEST Arabidopsis thaliana protein match is: ribosomal protein S6 (TAIR:AT4G31700.1). & (reliability: 762.0) & (original description: no original description)


Gene families : OG_42_0001972 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001972_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00020471-RA
Cluster HCCA clusters: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
172795 No alias Ribosomal protein S6e 0.05 Orthogroups_2024-Update
A4A49_38773 No alias 40s ribosomal protein s6-2 0.04 Orthogroups_2024-Update
A4A49_58422 No alias 40s ribosomal protein s6-1 0.06 Orthogroups_2024-Update
A4A49_61057 No alias 40s ribosomal protein s6-1 0.05 Orthogroups_2024-Update
Bradi1g21320 No alias Ribosomal protein S6e 0.02 Orthogroups_2024-Update
Bradi1g60730 No alias Ribosomal protein S6e 0.03 Orthogroups_2024-Update
Brara.A00605.1 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.C00414.1 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.H01340.1 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.J02318.1 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Cre09.g400650 No alias Ribosomal protein S6e 0.02 Orthogroups_2024-Update
GRMZM5G851698 No alias Ribosomal protein S6e 0.04 Orthogroups_2024-Update
Glyma.07G198600 No alias Ribosomal protein S6e 0.05 Orthogroups_2024-Update
Glyma.13G177800 No alias Ribosomal protein S6e 0.03 Orthogroups_2024-Update
Glyma.18G151800 No alias Ribosomal protein S6e 0.04 Orthogroups_2024-Update
HORVU2Hr1G010870.8 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
HORVU2Hr1G010890.2 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
HORVU2Hr1G029890.1 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Kfl00053_0450 kfl00053_0450_v1.1 (q9m3v8|rs6_aspof : 374.0) 40S ribosomal protein S6 -... 0.03 Orthogroups_2024-Update
MA_10426804g0010 No alias (q9m3v8|rs6_aspof : 406.0) 40S ribosomal protein S6 -... 0.04 Orthogroups_2024-Update
Mp4g01750.1 No alias component RPS6 of SSU proteome 0.04 Orthogroups_2024-Update
Potri.007G096300 No alias Ribosomal protein S6e 0.03 Orthogroups_2024-Update
Pp1s253_7V6 No alias 40S ribosomal protein S6 [Asparagus officinalis] 0.04 Orthogroups_2024-Update
Seita.2G394600.1 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Seita.3G362000.1 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Sobic.002G379500.3 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.008G098800.1 No alias component *(eS6) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Solyc08g006040 No alias 40S ribosomal protein S6 (AHRD V3.3 *** K4CI93_SOLLC) 0.05 Orthogroups_2024-Update
Solyc08g074240 No alias 40S ribosomal protein S6 (AHRD V3.3 *** K4CME5_SOLLC) 0.06 Orthogroups_2024-Update
Solyc12g096300 No alias 40S ribosomal protein S6 (AHRD V3.3 *** K4DHA3_SOLLC) 0.06 Orthogroups_2024-Update
Sopen08g002010 No alias Ribosomal protein S6e 0.05 Orthogroups_2024-Update
Sopen08g022890 No alias Ribosomal protein S6e 0.05 Orthogroups_2024-Update
Sopen12g032160 No alias Ribosomal protein S6e 0.05 Orthogroups_2024-Update
evm.model.contig_441.13 No alias (q9m3v8|rs6_aspof : 246.0) 40S ribosomal protein S6 -... 0.07 Orthogroups_2024-Update
evm.model.tig00000704.73 No alias (at5g10360 : 214.0) RPS6A and RPS6B are fully redundant... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0005347 ATP transmembrane transporter activity IEP Predicted GO
MF GO:0005471 ATP:ADP antiporter activity IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006163 purine nucleotide metabolic process IEP Predicted GO
BP GO:0006164 purine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
BP GO:0006753 nucleoside phosphate metabolic process IEP Predicted GO
BP GO:0006754 ATP biosynthetic process IEP Predicted GO
BP GO:0006862 nucleotide transport IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0008514 organic anion transmembrane transporter activity IEP Predicted GO
BP GO:0009117 nucleotide metabolic process IEP Predicted GO
BP GO:0009123 nucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009141 nucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Predicted GO
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Predicted GO
BP GO:0009150 purine ribonucleotide metabolic process IEP Predicted GO
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Predicted GO
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009165 nucleotide biosynthetic process IEP Predicted GO
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Predicted GO
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Predicted GO
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Predicted GO
BP GO:0009259 ribonucleotide metabolic process IEP Predicted GO
BP GO:0009260 ribonucleotide biosynthetic process IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0015078 proton transmembrane transporter activity IEP Predicted GO
MF GO:0015215 nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Predicted GO
MF GO:0015217 ADP transmembrane transporter activity IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0015301 anion:anion antiporter activity IEP Predicted GO
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Predicted GO
BP GO:0015672 monovalent inorganic cation transport IEP Predicted GO
BP GO:0015748 organophosphate ester transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
BP GO:0018196 peptidyl-asparagine modification IEP Predicted GO
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
BP GO:0046034 ATP metabolic process IEP Predicted GO
BP GO:0046390 ribose phosphate biosynthetic process IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
BP GO:0090407 organophosphate biosynthetic process IEP Predicted GO
BP GO:0098655 cation transmembrane transport IEP Predicted GO
BP GO:0098660 inorganic ion transmembrane transport IEP Predicted GO
BP GO:0098662 inorganic cation transmembrane transport IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098800 inner mitochondrial membrane protein complex IEP Predicted GO
MF GO:0099516 ion antiporter activity IEP Predicted GO
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Predicted GO
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
BP GO:1902600 proton transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001377 Ribosomal_S6e 1 128
No external refs found!