PSME_00020524-RA


Description : (at5g62940 : 135.0) HCA2 induces the formation of interfascicular cambium and regulates vascular tissue development in the aerial parts of the plant. Evidence from both gain of function and dominant negative alleles.; HIGH CAMBIAL ACTIVITY2 (HCA2); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: TARGET OF MONOPTEROS 6 (TAIR:AT5G60200.1); Has 1915 Blast hits to 1778 proteins in 135 species: Archae - 0; Bacteria - 49; Metazoa - 135; Fungi - 61; Plants - 1116; Viruses - 0; Other Eukaryotes - 554 (source: NCBI BLink). & (o24463|pbf_maize : 130.0) Dof zinc finger protein PBF (Prolamin box-binding factor) - Zea mays (Maize) & (reliability: 270.0) & (original description: no original description)


Gene families : OG_42_0000027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00020524-RA
Cluster HCCA clusters: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
A4A49_00536 No alias dof zinc finger protein dof5.7 0.02 Orthogroups_2024-Update
A4A49_33562 No alias dof zinc finger protein dof4.6 0.04 Orthogroups_2024-Update
At3g55370 No alias OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4] 0.04 Orthogroups_2024-Update
At3g61850 No alias Dof-type zinc finger DNA-binding family protein... 0.03 Orthogroups_2024-Update
At4g21080 No alias Dof zinc finger protein DOF4.5... 0.02 Orthogroups_2024-Update
At5g60200 No alias Dof zinc finger protein DOF5.3... 0.03 Orthogroups_2024-Update
Bradi1g15420 No alias Dof-type zinc finger DNA-binding family protein 0.02 Orthogroups_2024-Update
Bradi3g25670 No alias cycling DOF factor 1 0.04 Orthogroups_2024-Update
Bradi3g29940 No alias TARGET OF MONOPTEROS 6 0.04 Orthogroups_2024-Update
Bradi3g51510 No alias Dof-type zinc finger DNA-binding family protein 0.02 Orthogroups_2024-Update
Brara.C02339.1 No alias transcription factor *(DOF) 0.06 Orthogroups_2024-Update
Brara.D01727.1 No alias transcription factor *(DOF) 0.03 Orthogroups_2024-Update
Brara.F02200.1 No alias transcription factor *(DOF) 0.03 Orthogroups_2024-Update
Brara.H01965.1 No alias transcription factor *(DOF) 0.03 Orthogroups_2024-Update
GRMZM2G042218 No alias Dof-type zinc finger DNA-binding family protein 0.02 Orthogroups_2024-Update
Glyma.01G049400 No alias cycling DOF factor 3 0.03 Orthogroups_2024-Update
Glyma.02G108600 No alias cycling DOF factor 2 0.02 Orthogroups_2024-Update
Glyma.04G168300 No alias cycling DOF factor 3 0.03 Orthogroups_2024-Update
Glyma.05G018100 No alias OBF binding protein 4 0.03 Orthogroups_2024-Update
Glyma.05G037800 No alias Dof-type zinc finger DNA-binding family protein 0.02 Orthogroups_2024-Update
Glyma.06G194800 No alias cycling DOF factor 3 0.02 Orthogroups_2024-Update
Glyma.13G182700 No alias Dof-type zinc finger DNA-binding family protein 0.02 Orthogroups_2024-Update
Glyma.17G101000 No alias cycling DOF factor 3 0.02 Orthogroups_2024-Update
Glyma.18G289700 No alias OBF-binding protein 3 0.03 Orthogroups_2024-Update
Glyma.20G035200 No alias cycling DOF factor 2 0.03 Orthogroups_2024-Update
Glyma.20G216600 No alias Dof-type zinc finger DNA-binding family protein 0.04 Orthogroups_2024-Update
HORVU4Hr1G013890.1 No alias transcription factor *(DOF) 0.02 Orthogroups_2024-Update
LOC_Os02g47810 No alias dof zinc finger domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_16692g0010 No alias (at5g60200 : 130.0) Encodes a Dof-type transcription... 0.04 Orthogroups_2024-Update
MA_56828g0010 No alias (at5g02460 : 145.0) Dof-type zinc finger DNA-binding... 0.04 Orthogroups_2024-Update
MA_83624g0010 No alias (at5g60200 : 114.0) Encodes a Dof-type transcription... 0.04 Orthogroups_2024-Update
Potri.004G038800 No alias OBF binding protein 4 0.02 Orthogroups_2024-Update
Potri.005G149100 No alias Dof-type zinc finger DNA-binding family protein 0.03 Orthogroups_2024-Update
Potri.005G188900 No alias Dof-type zinc finger DNA-binding family protein 0.02 Orthogroups_2024-Update
Potri.009G029500 No alias OBF-binding protein 3 0.03 Orthogroups_2024-Update
Potri.016G069300 No alias Dof-type zinc finger DNA-binding family protein 0.02 Orthogroups_2024-Update
Pp1s118_226V6 No alias f-box family protein 0.03 Orthogroups_2024-Update
Pp1s199_87V6 No alias cycling dof factor 2 0.02 Orthogroups_2024-Update
Seita.3G371900.1 No alias transcription factor *(DOF) 0.05 Orthogroups_2024-Update
Seita.4G124800.1 No alias transcription factor *(DOF) 0.03 Orthogroups_2024-Update
Sobic.003G301700.1 No alias transcription factor *(DOF) 0.04 Orthogroups_2024-Update
Solyc02g065290 No alias Dof zinc finger protein2 0.05 Orthogroups_2024-Update
Solyc02g067230 No alias Dof zinc finger protein3 0.02 Orthogroups_2024-Update
Solyc02g076850 No alias Dof zinc finger protein4 0.02 Orthogroups_2024-Update
Solyc03g112930 No alias Dof zinc finger protein (AHRD V3.3 *** A0A0B6VJP1_TOBAC) 0.03 Orthogroups_2024-Update
Solyc06g076030 No alias Dof zinc finger protein (AHRD V3.3 *** Q9M4G1_SOLTU) 0.03 Orthogroups_2024-Update
Sopen02g022790 No alias Dof domain, zinc finger 0.03 Orthogroups_2024-Update
Sopen02g032780 No alias Dof domain, zinc finger 0.02 Orthogroups_2024-Update
Sopen03g022580 No alias Dof domain, zinc finger 0.03 Orthogroups_2024-Update
Sopen03g032010 No alias Dof domain, zinc finger 0.02 Orthogroups_2024-Update
Sopen05g032990 No alias Dof domain, zinc finger 0.02 Orthogroups_2024-Update
Sopen06g026650 No alias Dof domain, zinc finger 0.03 Orthogroups_2024-Update
Sopen06g027770 No alias Dof domain, zinc finger 0.04 Orthogroups_2024-Update
Sopen08g031140 No alias Dof domain, zinc finger 0.02 Orthogroups_2024-Update
Sopen09g005390 No alias Dof domain, zinc finger 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0052646 alditol phosphate metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR003851 Znf_Dof 35 91
No external refs found!