PSME_00020524-RA

Description : (at5g62940 : 135.0) HCA2 induces the formation of interfascicular cambium and regulates vascular tissue development in the aerial parts of the plant. Evidence from both gain of function and dominant negative alleles.; HIGH CAMBIAL ACTIVITY2 (HCA2); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: TARGET OF MONOPTEROS 6 (TAIR:AT5G60200.1); Has 1915 Blast hits to 1778 proteins in 135 species: Archae - 0; Bacteria - 49; Metazoa - 135; Fungi - 61; Plants - 1116; Viruses - 0; Other Eukaryotes - 554 (source: NCBI BLink). & (o24463|pbf_maize : 130.0) Dof zinc finger protein PBF (Prolamin box-binding factor) - Zea mays (Maize) & (reliability: 270.0) & (original description: no original description)

Gene families : OG_42_0000027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000027_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00020524-RA
Cluster	HCCA clusters: Cluster_152

Target	Alias	Description	ECC score	Gene Family Method
A4A49_00536	No alias	dof zinc finger protein dof5.7	0.02	Orthogroups_2024-Update
A4A49_33562	No alias	dof zinc finger protein dof4.6	0.04	Orthogroups_2024-Update
At3g55370	No alias	OBF-binding protein 3 [Source:UniProtKB/TrEMBL;Acc:F4IWU4]	0.04	Orthogroups_2024-Update
At3g61850	No alias	Dof-type zinc finger DNA-binding family protein...	0.03	Orthogroups_2024-Update
At4g21080	No alias	Dof zinc finger protein DOF4.5...	0.02	Orthogroups_2024-Update
At5g60200	No alias	Dof zinc finger protein DOF5.3...	0.03	Orthogroups_2024-Update
Bradi1g15420	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Orthogroups_2024-Update
Bradi3g25670	No alias	cycling DOF factor 1	0.04	Orthogroups_2024-Update
Bradi3g29940	No alias	TARGET OF MONOPTEROS 6	0.04	Orthogroups_2024-Update
Bradi3g51510	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Orthogroups_2024-Update
Brara.C02339.1	No alias	transcription factor *(DOF)	0.06	Orthogroups_2024-Update
Brara.D01727.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Brara.F02200.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Brara.H01965.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
GRMZM2G042218	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Orthogroups_2024-Update
Glyma.01G049400	No alias	cycling DOF factor 3	0.03	Orthogroups_2024-Update
Glyma.02G108600	No alias	cycling DOF factor 2	0.02	Orthogroups_2024-Update
Glyma.04G168300	No alias	cycling DOF factor 3	0.03	Orthogroups_2024-Update
Glyma.05G018100	No alias	OBF binding protein 4	0.03	Orthogroups_2024-Update
Glyma.05G037800	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Orthogroups_2024-Update
Glyma.06G194800	No alias	cycling DOF factor 3	0.02	Orthogroups_2024-Update
Glyma.13G182700	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Orthogroups_2024-Update
Glyma.17G101000	No alias	cycling DOF factor 3	0.02	Orthogroups_2024-Update
Glyma.18G289700	No alias	OBF-binding protein 3	0.03	Orthogroups_2024-Update
Glyma.20G035200	No alias	cycling DOF factor 2	0.03	Orthogroups_2024-Update
Glyma.20G216600	No alias	Dof-type zinc finger DNA-binding family protein	0.04	Orthogroups_2024-Update
HORVU4Hr1G013890.1	No alias	transcription factor *(DOF)	0.02	Orthogroups_2024-Update
LOC_Os02g47810	No alias	dof zinc finger domain containing protein, putative, expressed	0.03	Orthogroups_2024-Update
MA_16692g0010	No alias	(at5g60200 : 130.0) Encodes a Dof-type transcription...	0.04	Orthogroups_2024-Update
MA_56828g0010	No alias	(at5g02460 : 145.0) Dof-type zinc finger DNA-binding...	0.04	Orthogroups_2024-Update
MA_83624g0010	No alias	(at5g60200 : 114.0) Encodes a Dof-type transcription...	0.04	Orthogroups_2024-Update
Potri.004G038800	No alias	OBF binding protein 4	0.02	Orthogroups_2024-Update
Potri.005G149100	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Orthogroups_2024-Update
Potri.005G188900	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Orthogroups_2024-Update
Potri.009G029500	No alias	OBF-binding protein 3	0.03	Orthogroups_2024-Update
Potri.016G069300	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Orthogroups_2024-Update
Pp1s118_226V6	No alias	f-box family protein	0.03	Orthogroups_2024-Update
Pp1s199_87V6	No alias	cycling dof factor 2	0.02	Orthogroups_2024-Update
Seita.3G371900.1	No alias	transcription factor *(DOF)	0.05	Orthogroups_2024-Update
Seita.4G124800.1	No alias	transcription factor *(DOF)	0.03	Orthogroups_2024-Update
Sobic.003G301700.1	No alias	transcription factor *(DOF)	0.04	Orthogroups_2024-Update
Solyc02g065290	No alias	Dof zinc finger protein2	0.05	Orthogroups_2024-Update
Solyc02g067230	No alias	Dof zinc finger protein3	0.02	Orthogroups_2024-Update
Solyc02g076850	No alias	Dof zinc finger protein4	0.02	Orthogroups_2024-Update
Solyc03g112930	No alias	Dof zinc finger protein (AHRD V3.3 *** A0A0B6VJP1_TOBAC)	0.03	Orthogroups_2024-Update
Solyc06g076030	No alias	Dof zinc finger protein (AHRD V3.3 *** Q9M4G1_SOLTU)	0.03	Orthogroups_2024-Update
Sopen02g022790	No alias	Dof domain, zinc finger	0.03	Orthogroups_2024-Update
Sopen02g032780	No alias	Dof domain, zinc finger	0.02	Orthogroups_2024-Update
Sopen03g022580	No alias	Dof domain, zinc finger	0.03	Orthogroups_2024-Update
Sopen03g032010	No alias	Dof domain, zinc finger	0.02	Orthogroups_2024-Update
Sopen05g032990	No alias	Dof domain, zinc finger	0.02	Orthogroups_2024-Update
Sopen06g026650	No alias	Dof domain, zinc finger	0.03	Orthogroups_2024-Update
Sopen06g027770	No alias	Dof domain, zinc finger	0.04	Orthogroups_2024-Update
Sopen08g031140	No alias	Dof domain, zinc finger	0.02	Orthogroups_2024-Update
Sopen09g005390	No alias	Dof domain, zinc finger	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Predicted GO
MF	GO:0004367	glycerol-3-phosphate dehydrogenase [NAD+] activity	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
BP	GO:0006072	glycerol-3-phosphate metabolic process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006810	transport	IEP	Predicted GO
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015297	antiporter activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
BP	GO:0046168	glycerol-3-phosphate catabolic process	IEP	Predicted GO
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	Predicted GO
BP	GO:0051179	localization	IEP	Predicted GO
BP	GO:0051234	establishment of localization	IEP	Predicted GO
MF	GO:0051287	NAD binding	IEP	Predicted GO
BP	GO:0052646	alditol phosphate metabolic process	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	35	91

External Links

No external refs found!

PSME_00020524-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation