1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00020952-RA

PSME_00020952-RA


Description : (at2g39210 : 423.0) Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G28120.1); Has 3072 Blast hits to 2927 proteins in 685 species: Archae - 32; Bacteria - 1223; Metazoa - 36; Fungi - 288; Plants - 601; Viruses - 0; Other Eukaryotes - 892 (source: NCBI BLink). & (reliability: 846.0) & (original description: no original description)


Gene families : OG_42_0000169 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000169_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00020952-RA
Cluster HCCA clusters: Cluster_284

Target Alias Description ECC score Gene Family Method Actions
178001 No alias Nodulin-like / Major Facilitator Superfamily protein 0.02 Orthogroups_2024-Update
Brara.G02260.1 No alias UMF23-type solute transporter 0.02 Orthogroups_2024-Update
Glyma.03G185100 No alias Major facilitator superfamily protein 0.02 Orthogroups_2024-Update
Mp5g19920.1 No alias anion transporter (Fabaceae-N70) 0.02 Orthogroups_2024-Update
PSME_00001323-RA No alias (at2g39210 : 458.0) Major facilitator superfamily... 0.04 Orthogroups_2024-Update
PSME_00004095-RA No alias (at2g28120 : 219.0) Major facilitator superfamily... 0.04 Orthogroups_2024-Update
PSME_00034985-RA No alias (at2g39210 : 444.0) Major facilitator superfamily... 0.04 Orthogroups_2024-Update
PSME_00046657-RA No alias (at2g39210 : 308.0) Major facilitator superfamily... 0.03 Orthogroups_2024-Update
PSME_00053941-RA No alias (at2g39210 : 466.0) Major facilitator superfamily... 0.04 Orthogroups_2024-Update
Sopen10g033390 No alias Nodulin-like 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
InterPro domains Description Start Stop
IPR010658 Nodulin-like 15 261
No external refs found!