PSME_00021066-RA

Description : (at1g12220 : 163.0) Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.; RESISTANT TO P. SYRINGAE 5 (RPS5); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G12280.1). & (reliability: 326.0) & (original description: no original description)

Gene families : OG_42_0000113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00021066-RA

Target	Alias	Description	ECC score	Gene Family Method
Brara.F00179.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU3Hr1G108500.3	No alias	Unknown function	0.04	Orthogroups_2024-Update
MA_10436120g0010	No alias	no hits & (original description: no original description)	0.04	Orthogroups_2024-Update
MA_122523g0010	No alias	(at1g12210 : 224.0) RFL1 has high sequence similarity to...	0.04	Orthogroups_2024-Update
MA_549555g0010	No alias	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update
PSME_00018900-RA	No alias	no hits & (original description: no original description)	0.01	Orthogroups_2024-Update
PSME_00033120-RA	No alias	(at1g63350 : 267.0) Disease resistance protein...	0.03	Orthogroups_2024-Update
PSME_00033252-RA	No alias	no hits & (original description: no original description)	0.01	Orthogroups_2024-Update
PSME_00045900-RA	No alias	(at1g12220 : 213.0) Resistance gene, mediates resistance...	0.03	Orthogroups_2024-Update
Potri.001G405025	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.03	Orthogroups_2024-Update
Potri.T026700	No alias	NB-ARC domain-containing disease resistance protein	0.02	Orthogroups_2024-Update
Potri.T052600	No alias	NB-ARC domain-containing disease resistance protein	0.02	Orthogroups_2024-Update
Sopen11g003650	No alias	NB-ARC domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000776	kinetochore	IEP	Predicted GO
CC	GO:0031262	Ndc80 complex	IEP	Predicted GO
CC	GO:0044427	chromosomal part	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	157	393

External Links

No external refs found!

PSME_00021066-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation