- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : (at5g16560 : 147.0) Encodes a KANADI protein (KAN) that regulates organ polarity in Arabidopsis. KAN is required for abaxial identity in both leaves and carpels, and encodes a nuclear-localized protein in the GARP family of putative transcription factors. Together with KAN2, this gene appears to be involved in the development of the carpel and the outer integument of the ovule.Along with KAN2 and KAN4, KAN1 appears to be required for proper regulation of PIN1 in early embryogenesis.; KANADI (KAN); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G32240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 294.0) & (original description: no original description)
Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00021090-RA | |
| Cluster | HCCA clusters: Cluster_237 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 441930 | No alias | Homeodomain-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| AC234155.1_FG002 | No alias | Homeodomain-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| At4g13640 | No alias | Homeodomain-like superfamily protein [Source:TAIR;Acc:AT4G13640] | 0.03 | Orthogroups_2024-Update | |
| Brara.H01468.1 | No alias | GARP subgroup PHL transcription factor & transcription... | 0.03 | Orthogroups_2024-Update | |
| Glyma.08G116700 | No alias | myb-like HTH transcriptional regulator family protein | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G056580.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| LOC_Os03g21240 | No alias | myb-like DNA-binding domain containing protein, expressed | 0.04 | Orthogroups_2024-Update | |
| Mp4g01560.1 | No alias | G2-like GARP transcription factor | 0.04 | Orthogroups_2024-Update | |
| Potri.016G121800 | No alias | myb-like HTH transcriptional regulator family protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s27_9V6 | No alias | MUJ8.2; myb family transcription factor [Arabidopsis thaliana] | 0.02 | Orthogroups_2024-Update | |
| Pp1s82_168V6 | No alias | No description available | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0005543 | phospholipid binding | IEP | Predicted GO |
| BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
| BP | GO:0006338 | chromatin remodeling | IEP | Predicted GO |
| BP | GO:0006486 | protein glycosylation | IEP | Predicted GO |
| MF | GO:0008289 | lipid binding | IEP | Predicted GO |
| BP | GO:0043413 | macromolecule glycosylation | IEP | Predicted GO |
| BP | GO:0070085 | glycosylation | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |