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  5. Sopen05g031050

Sopen05g031050


Description : Region in Clathrin and VPS


Gene families : OG_42_0001928 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001928_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g031050
Cluster HCCA clusters: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
149750 No alias Clathrin, heavy chain 0.02 Orthogroups_2024-Update
Bradi4g26877 No alias Clathrin, heavy chain 0.04 Orthogroups_2024-Update
Bradi4g44977 No alias Clathrin, heavy chain 0.04 Orthogroups_2024-Update
Brara.C03244.1 No alias heavy chain of clathrin triskelion 0.02 Orthogroups_2024-Update
Glyma.02G258200 No alias Clathrin, heavy chain 0.02 Orthogroups_2024-Update
Kfl00232_0230 kfl00232_0230_v1.1 (at3g11130 : 2670.0) Clathrin, heavy chain; FUNCTIONS... 0.02 Orthogroups_2024-Update
Pp1s147_10V6 No alias F9F8.6; clathrin heavy chain, putative [KO:K04646]... 0.03 Orthogroups_2024-Update
Pp1s7_102V6 No alias F9F8.6; clathrin heavy chain, putative [KO:K04646]... 0.02 Orthogroups_2024-Update
Seita.7G333500.1 No alias heavy chain of clathrin triskelion 0.06 Orthogroups_2024-Update
Seita.8G020100.1 No alias heavy chain of clathrin triskelion 0.06 Orthogroups_2024-Update
Sobic.005G003300.1 No alias heavy chain of clathrin triskelion 0.04 Orthogroups_2024-Update
Sobic.008G003700.1 No alias heavy chain of clathrin triskelion 0.02 Orthogroups_2024-Update
Solyc05g052510 No alias Clathrin heavy chain (AHRD V3.3 *** K4C1T2_SOLLC) 0.03 Orthogroups_2024-Update
Solyc06g051310 No alias Clathrin heavy chain (AHRD V3.3 *** K4C5S4_SOLLC) 0.02 Orthogroups_2024-Update
evm.model.tig00000042.11 No alias (at3g08530 : 1751.0) Clathrin, heavy chain; FUNCTIONS... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA InterProScan predictions
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA InterProScan predictions
CC GO:0030132 clathrin coat of coated pit IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000547 Clathrin_H-chain/VPS_repeat 1289 1431
IPR000547 Clathrin_H-chain/VPS_repeat 1440 1579
IPR000547 Clathrin_H-chain/VPS_repeat 993 1132
IPR000547 Clathrin_H-chain/VPS_repeat 701 840
IPR000547 Clathrin_H-chain/VPS_repeat 850 974
IPR000547 Clathrin_H-chain/VPS_repeat 1147 1281
IPR000547 Clathrin_H-chain/VPS_repeat 557 688
IPR022365 Clathrin_H-chain_propeller_rpt 154 197
IPR022365 Clathrin_H-chain_propeller_rpt 22 56
IPR015348 Clathrin_H-chain_linker_core 344 367
No external refs found!