Description : (at5g60450 : 318.0) Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity.; auxin response factor 4 (ARF4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative phase change, regulation of transcription, DNA-dependent, abaxial cell fate specification; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (TAIR:AT2G33860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 636.0) & (original description: no original description)
Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_21432 | No alias | auxin response factor 10 | 0.01 | Orthogroups_2024-Update | |
At4g23980 | No alias | Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XED8] | 0.01 | Orthogroups_2024-Update | |
Bradi2g08120 | No alias | auxin response factor 11 | 0.03 | Orthogroups_2024-Update | |
Brara.B03784.1 | No alias | ARF-type transcription factor | 0.01 | Orthogroups_2024-Update | |
Brara.D02066.1 | No alias | ARF-type transcription factor | 0.02 | Orthogroups_2024-Update | |
Brara.F02033.1 | No alias | ARF-type transcription factor | 0.01 | Orthogroups_2024-Update | |
Brara.K00855.1 | No alias | ARF-type transcription factor | 0.01 | Orthogroups_2024-Update | |
GRMZM5G808366 | No alias | auxin response factor 17 | 0.02 | Orthogroups_2024-Update | |
Glyma.03G070500 | No alias | auxin response factor 9 | 0.02 | Orthogroups_2024-Update | |
Glyma.03G258300 | No alias | auxin response factor 18 | 0.01 | Orthogroups_2024-Update | |
Glyma.04G200600 | No alias | auxin response factor 2 | 0.02 | Orthogroups_2024-Update | |
Glyma.08G100100 | No alias | auxin response factor 8 | 0.01 | Orthogroups_2024-Update | |
Glyma.14G208500 | No alias | auxin response factor 8 | 0.04 | Orthogroups_2024-Update | |
HORVU2Hr1G125740.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
HORVU7Hr1G033820.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU7Hr1G051930.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU7Hr1G096460.13 | No alias | ARF-type transcription factor & auxin signal mediator... | 0.02 | Orthogroups_2024-Update | |
LOC_Os02g06910 | No alias | auxin response factor 6, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os04g57610 | No alias | auxin response factor, putative, expressed | 0.01 | Orthogroups_2024-Update | |
MA_2237g0020 | No alias | (at4g30080 : 537.0) Involved in root cap cell... | 0.02 | Orthogroups_2024-Update | |
MA_40335g0010 | No alias | (at5g62000 : 752.0) Encodes an auxin response factor.... | 0.01 | Orthogroups_2024-Update | |
Pp1s133_56V6 | No alias | auxin response factor 8 | 0.01 | Orthogroups_2024-Update | |
Seita.5G265200.1 | No alias | ARF-type transcription factor | 0.03 | Orthogroups_2024-Update | |
Sobic.008G096000.1 | No alias | ARF-type transcription factor | 0.02 | Orthogroups_2024-Update | |
Solyc08g008380 | No alias | Auxin Response Factor 9B | 0.01 | Orthogroups_2024-Update | |
Sopen03g037200 | No alias | Auxin response factor | 0.01 | Orthogroups_2024-Update | |
Sopen07g023180 | No alias | Auxin response factor | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000148 | 1,3-beta-D-glucan synthase complex | IEP | Predicted GO |
BP | GO:0000271 | polysaccharide biosynthetic process | IEP | Predicted GO |
MF | GO:0003843 | 1,3-beta-D-glucan synthase activity | IEP | Predicted GO |
CC | GO:0005634 | nucleus | IEP | Predicted GO |
BP | GO:0005976 | polysaccharide metabolic process | IEP | Predicted GO |
BP | GO:0006073 | cellular glucan metabolic process | IEP | Predicted GO |
BP | GO:0006074 | (1->3)-beta-D-glucan metabolic process | IEP | Predicted GO |
BP | GO:0006075 | (1->3)-beta-D-glucan biosynthetic process | IEP | Predicted GO |
MF | GO:0008194 | UDP-glycosyltransferase activity | IEP | Predicted GO |
BP | GO:0009250 | glucan biosynthetic process | IEP | Predicted GO |
BP | GO:0016051 | carbohydrate biosynthetic process | IEP | Predicted GO |
BP | GO:0033692 | cellular polysaccharide biosynthetic process | IEP | Predicted GO |
BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | Predicted GO |
MF | GO:0035251 | UDP-glucosyltransferase activity | IEP | Predicted GO |
BP | GO:0044042 | glucan metabolic process | IEP | Predicted GO |
BP | GO:0044262 | cellular carbohydrate metabolic process | IEP | Predicted GO |
BP | GO:0044264 | cellular polysaccharide metabolic process | IEP | Predicted GO |
CC | GO:0044459 | plasma membrane part | IEP | Predicted GO |
CC | GO:0044464 | cell part | IEP | Predicted GO |
MF | GO:0046527 | glucosyltransferase activity | IEP | Predicted GO |
BP | GO:0051273 | beta-glucan metabolic process | IEP | Predicted GO |
BP | GO:0051274 | beta-glucan biosynthetic process | IEP | Predicted GO |
BP | GO:0051726 | regulation of cell cycle | IEP | Predicted GO |
CC | GO:0098796 | membrane protein complex | IEP | Predicted GO |
CC | GO:0098797 | plasma membrane protein complex | IEP | Predicted GO |
CC | GO:1902494 | catalytic complex | IEP | Predicted GO |
CC | GO:1990234 | transferase complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR003340 | B3_DNA-bd | 137 | 238 |
No external refs found! |