PSME_00021251-RA


Description : (at5g60450 : 318.0) Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity.; auxin response factor 4 (ARF4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative phase change, regulation of transcription, DNA-dependent, abaxial cell fate specification; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (TAIR:AT2G33860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 636.0) & (original description: no original description)


Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00021251-RA

Target Alias Description ECC score Gene Family Method Actions
A4A49_21432 No alias auxin response factor 10 0.01 Orthogroups_2024-Update
At4g23980 No alias Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XED8] 0.01 Orthogroups_2024-Update
Bradi2g08120 No alias auxin response factor 11 0.03 Orthogroups_2024-Update
Brara.B03784.1 No alias ARF-type transcription factor 0.01 Orthogroups_2024-Update
Brara.D02066.1 No alias ARF-type transcription factor 0.02 Orthogroups_2024-Update
Brara.F02033.1 No alias ARF-type transcription factor 0.01 Orthogroups_2024-Update
Brara.K00855.1 No alias ARF-type transcription factor 0.01 Orthogroups_2024-Update
GRMZM5G808366 No alias auxin response factor 17 0.02 Orthogroups_2024-Update
Glyma.03G070500 No alias auxin response factor 9 0.02 Orthogroups_2024-Update
Glyma.03G258300 No alias auxin response factor 18 0.01 Orthogroups_2024-Update
Glyma.04G200600 No alias auxin response factor 2 0.02 Orthogroups_2024-Update
Glyma.08G100100 No alias auxin response factor 8 0.01 Orthogroups_2024-Update
Glyma.14G208500 No alias auxin response factor 8 0.04 Orthogroups_2024-Update
HORVU2Hr1G125740.1 No alias Unknown function 0.01 Orthogroups_2024-Update
HORVU7Hr1G033820.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G051930.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G096460.13 No alias ARF-type transcription factor & auxin signal mediator... 0.02 Orthogroups_2024-Update
LOC_Os02g06910 No alias auxin response factor 6, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g57610 No alias auxin response factor, putative, expressed 0.01 Orthogroups_2024-Update
MA_2237g0020 No alias (at4g30080 : 537.0) Involved in root cap cell... 0.02 Orthogroups_2024-Update
MA_40335g0010 No alias (at5g62000 : 752.0) Encodes an auxin response factor.... 0.01 Orthogroups_2024-Update
Pp1s133_56V6 No alias auxin response factor 8 0.01 Orthogroups_2024-Update
Seita.5G265200.1 No alias ARF-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.008G096000.1 No alias ARF-type transcription factor 0.02 Orthogroups_2024-Update
Solyc08g008380 No alias Auxin Response Factor 9B 0.01 Orthogroups_2024-Update
Sopen03g037200 No alias Auxin response factor 0.01 Orthogroups_2024-Update
Sopen07g023180 No alias Auxin response factor 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 137 238
No external refs found!