1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00021352-RA

PSME_00021352-RA


Description : (at5g61400 : 416.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G02150.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q76c99|rf1_orysa : 282.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 832.0) & (original description: no original description)


Gene families : OG_42_0002181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002181_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00021352-RA
Cluster HCCA clusters: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
Sopen07g024110 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 477 526
IPR002885 Pentatricopeptide_repeat 636 680
IPR002885 Pentatricopeptide_repeat 547 596
IPR002885 Pentatricopeptide_repeat 267 316
IPR002885 Pentatricopeptide_repeat 407 455
IPR002885 Pentatricopeptide_repeat 334 365
IPR002885 Pentatricopeptide_repeat 368 400
IPR002885 Pentatricopeptide_repeat 200 228
IPR002885 Pentatricopeptide_repeat 237 265
No external refs found!