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  5. PSME_00021434-RA

PSME_00021434-RA


Description : (at5g65560 : 439.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G77340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q76c99|rf1_orysa : 279.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 878.0) & (original description: no original description)


Gene families : OG_42_0001457 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001457_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00021434-RA
Cluster HCCA clusters: Cluster_230

Target Alias Description ECC score Gene Family Method Actions
MA_10425907g0010 No alias (at3g22470 : 354.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_10434102g0010 No alias (at1g12775 : 197.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
Seita.4G252800.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 534 590
IPR002885 Pentatricopeptide_repeat 185 242
IPR002885 Pentatricopeptide_repeat 475 524
IPR002885 Pentatricopeptide_repeat 744 792
IPR002885 Pentatricopeptide_repeat 265 314
IPR002885 Pentatricopeptide_repeat 344 384
IPR002885 Pentatricopeptide_repeat 405 454
IPR002885 Pentatricopeptide_repeat 713 735
IPR002885 Pentatricopeptide_repeat 678 707
IPR002885 Pentatricopeptide_repeat 636 667
No external refs found!