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- PSME_00021632-RA
PSME_00021632-RA
Description : (at3g18090 : 612.0) Encodes a subunit of RNA polymerase IV (aka RNA polymerase D). NRPD2b is closely related to NRPD2a, but has lower levels of transcription and does not affect endogenous siRNA when mutated.; nuclear RNA polymerase D2B (NRPD2B); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase D2A (TAIR:AT3G23780.2); Has 34356 Blast hits to 27293 proteins in 9050 species: Archae - 497; Bacteria - 15729; Metazoa - 585; Fungi - 7161; Plants - 2537; Viruses - 228; Other Eukaryotes - 7619 (source: NCBI BLink). & (p60283|rpob_phypa : 144.0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) - Physcomitrella patens (Moss) & (reliability: 1224.0) & (original description: no original description)
Expression Profile
Attention: This gene has low abundance.
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
Type | Description | Actions |
Neighborhood | Pseudotsuga release: PSME_00021632-RA | |
Cluster | HCCA clusters: Cluster_230 | |
Expression Context Conservation (ECC)
Target | Alias | Description | ECC score | Gene Family Method | Actions |
GRMZM2G427031 | No alias | nuclear RNA polymerase D2A | 0.04 | Orthogroups_2024-Update | |
Sobic.010G080700.2 | No alias | component *(NRPC2) of RNA polymerase III complex | 0.02 | Orthogroups_2024-Update | |
evm.model.tig00020554.10 | No alias | (at5g45140 : 788.0) Encodes a subunit of RNA polymerase... | 0.01 | Orthogroups_2024-Update | |
Functional Annotation
Type | GO Term | Name | Evidence | Source |
MF | GO:0003674 | molecular_function | None | Extended |
MF | GO:0003676 | nucleic acid binding | None | Extended |
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
MF | GO:0003824 | catalytic activity | None | Extended |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | InterProScan predictions |
MF | GO:0005488 | binding | None | Extended |
BP | GO:0006139 | nucleobase-containing compound metabolic process | None | Extended |
BP | GO:0006351 | transcription, DNA-templated | IEA | InterProScan predictions |
BP | GO:0006725 | cellular aromatic compound metabolic process | None | Extended |
BP | GO:0006807 | nitrogen compound metabolic process | None | Extended |
BP | GO:0008150 | biological_process | None | Extended |
BP | GO:0008152 | metabolic process | None | Extended |
BP | GO:0009058 | biosynthetic process | None | Extended |
BP | GO:0009059 | macromolecule biosynthetic process | None | Extended |
BP | GO:0009987 | cellular process | None | Extended |
BP | GO:0016070 | RNA metabolic process | None | Extended |
MF | GO:0016740 | transferase activity | None | Extended |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | None | Extended |
MF | GO:0016779 | nucleotidyltransferase activity | None | Extended |
BP | GO:0018130 | heterocycle biosynthetic process | None | Extended |
BP | GO:0019438 | aromatic compound biosynthetic process | None | Extended |
BP | GO:0032774 | RNA biosynthetic process | None | Extended |
MF | GO:0034062 | 5'-3' RNA polymerase activity | None | Extended |
BP | GO:0034641 | cellular nitrogen compound metabolic process | None | Extended |
BP | GO:0034645 | cellular macromolecule biosynthetic process | None | Extended |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | None | Extended |
BP | GO:0043170 | macromolecule metabolic process | None | Extended |
BP | GO:0044237 | cellular metabolic process | None | Extended |
BP | GO:0044238 | primary metabolic process | None | Extended |
BP | GO:0044249 | cellular biosynthetic process | None | Extended |
BP | GO:0044260 | cellular macromolecule metabolic process | None | Extended |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | None | Extended |
BP | GO:0046483 | heterocycle metabolic process | None | Extended |
BP | GO:0071704 | organic substance metabolic process | None | Extended |
BP | GO:0090304 | nucleic acid metabolic process | None | Extended |
MF | GO:0097159 | organic cyclic compound binding | None | Extended |
BP | GO:0097659 | nucleic acid-templated transcription | None | Extended |
MF | GO:0097747 | RNA polymerase activity | None | Extended |
MF | GO:0140098 | catalytic activity, acting on RNA | None | Extended |
BP | GO:1901360 | organic cyclic compound metabolic process | None | Extended |
BP | GO:1901362 | organic cyclic compound biosynthetic process | None | Extended |
MF | GO:1901363 | heterocyclic compound binding | None | Extended |
BP | GO:1901576 | organic substance biosynthetic process | None | Extended |
Type | GO Term | Name | Evidence | Source |
BP | GO:0001522 | pseudouridine synthesis | IEP | Predicted GO |
MF | GO:0003909 | DNA ligase activity | IEP | Predicted GO |
MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Predicted GO |
MF | GO:0004298 | threonine-type endopeptidase activity | IEP | Predicted GO |
CC | GO:0005839 | proteasome core complex | IEP | Predicted GO |
BP | GO:0006310 | DNA recombination | IEP | Predicted GO |
MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
MF | GO:0008519 | ammonium transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0009451 | RNA modification | IEP | Predicted GO |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Predicted GO |
BP | GO:0015696 | ammonium transport | IEP | Predicted GO |
MF | GO:0016597 | amino acid binding | IEP | Predicted GO |
MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Predicted GO |
MF | GO:0016866 | intramolecular transferase activity | IEP | Predicted GO |
MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Predicted GO |
CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
MF | GO:0031406 | carboxylic acid binding | IEP | Predicted GO |
CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
MF | GO:0043167 | ion binding | IEP | Predicted GO |
MF | GO:0043169 | cation binding | IEP | Predicted GO |
MF | GO:0043177 | organic acid binding | IEP | Predicted GO |
MF | GO:0043531 | ADP binding | IEP | Predicted GO |
MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
MF | GO:0070003 | threonine-type peptidase activity | IEP | Predicted GO |
BP | GO:0071705 | nitrogen compound transport | IEP | Predicted GO |