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  5. PSME_00021850-RA

PSME_00021850-RA


Description : (at4g17180 : 550.0) O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT4G31140.1); Has 2802 Blast hits to 2733 proteins in 160 species: Archae - 0; Bacteria - 8; Metazoa - 3; Fungi - 65; Plants - 2718; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). & (p52408|e13b_prupe : 208.0) Glucan endo-1,3-beta-glucosidase, basic isoform precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (PpGns1) - Prunus persica (Peach) & (reliability: 1100.0) & (original description: no original description)


Gene families : OG_42_0000342 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000342_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00021850-RA
Cluster HCCA clusters: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
89756 No alias O-Glycosyl hydrolases family 17 protein 0.06 Orthogroups_2024-Update
At2g19440 No alias O-Glycosyl hydrolases family 17 protein... 0.03 Orthogroups_2024-Update
Bradi1g60410 No alias O-Glycosyl hydrolases family 17 protein 0.03 Orthogroups_2024-Update
Bradi2g18420 No alias O-Glycosyl hydrolases family 17 protein 0.05 Orthogroups_2024-Update
GRMZM2G310739 No alias O-Glycosyl hydrolases family 17 protein 0.03 Orthogroups_2024-Update
Sobic.004G036800.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR012946 X8 387 455
IPR000490 Glyco_hydro_17 48 366
No external refs found!