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  5. PSME_00021863-RA

PSME_00021863-RA


Description : (at2g22070 : 612.0) pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G25360.1); Has 47939 Blast hits to 14346 proteins in 287 species: Archae - 0; Bacteria - 20; Metazoa - 98; Fungi - 122; Plants - 46979; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink). & (q76c99|rf1_orysa : 112.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1152.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00021863-RA
Cluster HCCA clusters: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
106624 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
107700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
123655 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
At1g77170 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.04 Orthogroups_2024-Update
At3g23330 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Orthogroups_2024-Update
At5g48910 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.05 Orthogroups_2024-Update
Bradi2g23670 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g54927 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g40131 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Brara.C03980.1 No alias RNA editing factor *(MEF25) 0.04 Orthogroups_2024-Update
Brara.F01963.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G029859 No alias dynamin-like protein 6 0.03 Orthogroups_2024-Update
GRMZM2G045154 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G076257 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G138303 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G161368 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM5G811022 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G237100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G052470.6 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G065970.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os02g26940 No alias vegetative storage protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g13230 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g58100 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g60690 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g12130 No alias EMB2261, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g30760 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_112849g0010 No alias (at3g09040 : 606.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_122546g0010 No alias (at3g13770 : 499.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_13022g0010 No alias (at2g13600 : 530.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_1673g0010 No alias (at2g22070 : 486.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_16823g0010 No alias (at1g11290 : 694.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_286190g0010 No alias (at3g63370 : 605.0) Encodes a chloroplast RNA editing... 0.04 Orthogroups_2024-Update
MA_49545g0010 No alias (at1g11290 : 523.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update
MA_519985g0010 No alias (at3g03580 : 679.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_8893194g0010 No alias (at5g52630 : 608.0) Encodes a member of the DYW... 0.03 Orthogroups_2024-Update
PSME_00006159-RA No alias (at3g46790 : 260.0) Encodes a member of a PCMP (plant... 0.06 Orthogroups_2024-Update
PSME_00015008-RA No alias (at4g33170 : 594.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Seita.1G290500.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Seita.5G242100.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.9G162400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G403900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G182501.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.010G097700.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc02g088650 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc11g005960 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen06g033290 No alias PPR repeat 0.02 Orthogroups_2024-Update
evm.model.tig00001038.5 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 422 469
IPR002885 Pentatricopeptide_repeat 523 570
IPR002885 Pentatricopeptide_repeat 321 367
IPR032867 DYW_dom 696 820
IPR002885 Pentatricopeptide_repeat 201 215
IPR002885 Pentatricopeptide_repeat 664 692
IPR002885 Pentatricopeptide_repeat 136 161
IPR002885 Pentatricopeptide_repeat 598 621
IPR002885 Pentatricopeptide_repeat 164 178
No external refs found!