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  5. PSME_00021867-RA

PSME_00021867-RA


Description : (at3g17450 : 91.7) hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink). & (reliability: 183.4) & (original description: no original description)


Gene families : OG_42_0002139 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002139_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00021867-RA
Cluster HCCA clusters: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
PSME_00009409-RA No alias (at3g22220 : 94.4) hAT transposon superfamily; FUNCTIONS... 0.02 Orthogroups_2024-Update
PSME_00010426-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00011784-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00015761-RA No alias (at3g17450 : 129.0) hAT dimerisation domain-containing... 0.06 Orthogroups_2024-Update
PSME_00028805-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00040720-RA No alias no hits & (original description: no original description) 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!