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  5. PSME_00021936-RA

PSME_00021936-RA


Description : (q9slx0|ima1b_orysa : 376.0) Importin alpha-1b subunit - Oryza sativa (Rice) & (at3g06720 : 367.0) Encodes importin alpha involved in nuclear import.; AT-IMP; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol, nuclear envelope, nucleolus, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 2 (TAIR:AT4G16143.2); Has 4059 Blast hits to 2974 proteins in 281 species: Archae - 4; Bacteria - 22; Metazoa - 1537; Fungi - 665; Plants - 1109; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink). & (reliability: 734.0) & (original description: no original description)


Gene families : OG_42_0005364 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005364_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00021936-RA
Cluster HCCA clusters: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
PSME_00000989-RA No alias (q71vm4|ima1a_orysa : 407.0) Importin alpha-1a subunit -... 0.03 Orthogroups_2024-Update
PSME_00005784-RA No alias (at3g06720 : 414.0) Encodes importin alpha involved in... 0.04 Orthogroups_2024-Update
PSME_00019881-RA No alias (at3g06720 : 432.0) Encodes importin alpha involved in... 0.04 Orthogroups_2024-Update
PSME_00032215-RA No alias (q71vm4|ima1a_orysa : 483.0) Importin alpha-1a subunit -... 0.04 Orthogroups_2024-Update
PSME_00038790-RA No alias (q9slx0|ima1b_orysa : 214.0) Importin alpha-1b subunit -... 0.04 Orthogroups_2024-Update
PSME_00041068-RA No alias (q9slx0|ima1b_orysa : 305.0) Importin alpha-1b subunit -... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR032413 Arm_3 338 382
IPR000225 Armadillo 284 315
IPR000225 Armadillo 22 60
IPR000225 Armadillo 161 198
IPR000225 Armadillo 243 278
No external refs found!