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  5. PSME_00021963-RA

PSME_00021963-RA


Description : (at1g05200 : 294.0) member of Putative ligand-gated ion channel subunit family; glutamate receptor 3.4 (GLR3.4); FUNCTIONS IN: protein binding, intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Glutamate receptor-related (InterPro:IPR015683), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Extracellular ligand-binding receptor (InterPro:IPR001828), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.5 (TAIR:AT2G32390.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q7xp59|glr31_orysa : 257.0) Glutamate receptor 3.1 precursor (Ligand-gated ion channel 3.1) - Oryza sativa (Rice) & (reliability: 588.0) & (original description: no original description)


Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00021963-RA

Target Alias Description ECC score Gene Family Method Actions
Bradi1g31350 No alias glutamate receptor 2.2 0.06 Orthogroups_2024-Update
Bradi4g30850 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Bradi4g30880 No alias glutamate receptor 2.7 0.04 Orthogroups_2024-Update
Brara.F03008.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Glyma.09G197400 No alias glutamate receptor 3.3 0.04 Orthogroups_2024-Update
Glyma.13G172100 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Glyma.13G272400 No alias glutamate receptor 2.8 0.02 Orthogroups_2024-Update
HORVU2Hr1G064530.8 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
HORVU5Hr1G010420.23 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
HORVU5Hr1G063420.2 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
HORVU5Hr1G063510.2 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
LOC_Os04g49570 No alias glutamate receptor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g06130 No alias glutamate receptor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g08900 No alias glutamate receptor 2.6 precursor, putative, expressed 0.04 Orthogroups_2024-Update
MA_10140272g0010 No alias no hits & (original description: no original description) 0.07 Orthogroups_2024-Update
MA_10426811g0010 No alias (at1g05200 : 243.0) member of Putative ligand-gated ion... 0.04 Orthogroups_2024-Update
MA_9224859g0010 No alias (at4g35290 : 187.0) Encodes a putative glutamate... 0.04 Orthogroups_2024-Update
PSME_00001097-RA No alias (at2g29120 : 619.0) member of Putative ligand-gated ion... 0.04 Orthogroups_2024-Update
PSME_00001098-RA No alias (at2g29120 : 637.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00001291-RA No alias (at4g35290 : 534.0) Encodes a putative glutamate... 0.03 Orthogroups_2024-Update
PSME_00007782-RA No alias (at2g17260 : 247.0) Encodes a glutamate receptor.... 0.1 Orthogroups_2024-Update
PSME_00009649-RA No alias (at4g35290 : 475.0) Encodes a putative glutamate... 0.04 Orthogroups_2024-Update
PSME_00010771-RA No alias (at1g42540 : 809.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00020365-RA No alias (at2g29120 : 505.0) member of Putative ligand-gated ion... 0.02 Orthogroups_2024-Update
PSME_00021964-RA No alias (at1g05200 : 282.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00023170-RA No alias (at1g42540 : 830.0) member of Putative ligand-gated ion... 0.04 Orthogroups_2024-Update
PSME_00024792-RA No alias (at2g29120 : 571.0) member of Putative ligand-gated ion... 0.04 Orthogroups_2024-Update
PSME_00027643-RA No alias (at2g29120 : 565.0) member of Putative ligand-gated ion... 0.11 Orthogroups_2024-Update
PSME_00032127-RA No alias (at4g35290 : 436.0) Encodes a putative glutamate... 0.03 Orthogroups_2024-Update
PSME_00033212-RA No alias (at1g42540 : 242.0) member of Putative ligand-gated ion... 0.06 Orthogroups_2024-Update
PSME_00037073-RA No alias (at2g17260 : 246.0) Encodes a glutamate receptor.... 0.05 Orthogroups_2024-Update
PSME_00037074-RA No alias (at1g05200 : 98.6) member of Putative ligand-gated ion... 0.04 Orthogroups_2024-Update
Potri.001G374700 No alias glutamate receptor 2.7 0.04 Orthogroups_2024-Update
Potri.002G007400 No alias glutamate receptor 3.3 0.02 Orthogroups_2024-Update
Potri.011G062750 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
Potri.011G062900 No alias glutamate receptor 2.7 0.05 Orthogroups_2024-Update
Potri.014G028800 No alias glutamate receptor 2.7 0.04 Orthogroups_2024-Update
Seita.1G009400.1 No alias ligand-gated cation channel *(GLR) 0.06 Orthogroups_2024-Update
Seita.1G346100.1 No alias ligand-gated cation channel *(GLR) 0.05 Orthogroups_2024-Update
Seita.2G212500.1 No alias ligand-gated cation channel *(GLR) 0.05 Orthogroups_2024-Update
Seita.2G212600.1 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
Seita.2G212900.1 No alias ligand-gated cation channel *(GLR) 0.06 Orthogroups_2024-Update
Sobic.002G208500.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Sobic.002G208700.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Sobic.002G209100.1 No alias ligand-gated cation channel *(GLR) 0.06 Orthogroups_2024-Update
Sobic.004G013300.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Sobic.010G068600.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Sobic.010G231500.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004970 ionotropic glutamate receptor activity IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001320 Iontro_rcpt 645 714
IPR001320 Iontro_rcpt 401 432
IPR001638 Solute-binding_3/MltF_N 85 400
IPR019594 Glu/Gly-bd 540 624
No external refs found!