PSME_00021964-RA

Description : (at1g05200 : 282.0) member of Putative ligand-gated ion channel subunit family; glutamate receptor 3.4 (GLR3.4); FUNCTIONS IN: protein binding, intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Glutamate receptor-related (InterPro:IPR015683), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Extracellular ligand-binding receptor (InterPro:IPR001828), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.5 (TAIR:AT2G32390.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q7xp59|glr31_orysa : 251.0) Glutamate receptor 3.1 precursor (Ligand-gated ion channel 3.1) - Oryza sativa (Rice) & (reliability: 564.0) & (original description: no original description)

Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00021964-RA
Cluster	HCCA clusters: Cluster_112

Target	Alias	Description	ECC score	Gene Family Method
A4A49_28967	No alias	glutamate receptor 2.8	0.04	Orthogroups_2024-Update
At2g24710	No alias	glutamate receptor 2.3 [Source:TAIR;Acc:AT2G24710]	0.03	Orthogroups_2024-Update
At3g04110	No alias	Glutamate receptor 1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8W7]	0.02	Orthogroups_2024-Update
Bradi4g30840	No alias	glutamate receptor 2.7	0.05	Orthogroups_2024-Update
Bradi4g30860	No alias	glutamate receptor 2.7	0.04	Orthogroups_2024-Update
Brara.E01369.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Brara.G00725.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Brara.I03484.1	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
GRMZM2G139933	No alias	glutamate receptor 2.7	0.02	Orthogroups_2024-Update
GRMZM2G148807	No alias	glutamate receptor 3.4	0.02	Orthogroups_2024-Update
Glyma.07G226400	No alias	glutamate receptor 2.8	0.03	Orthogroups_2024-Update
Glyma.13G272400	No alias	glutamate receptor 2.8	0.03	Orthogroups_2024-Update
Glyma.13G308400	No alias	glutamate receptor 3.4	0.03	Orthogroups_2024-Update
HORVU0Hr1G036590.3	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
HORVU2Hr1G045730.11	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
HORVU2Hr1G049510.4	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
HORVU5Hr1G010420.23	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
HORVU5Hr1G072170.1	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
MA_16378g0010	No alias	(at2g32390 : 296.0) Encodes a ionotropic glutamate...	0.03	Orthogroups_2024-Update
MA_958834g0010	No alias	(at4g35290 : 358.0) Encodes a putative glutamate...	0.03	Orthogroups_2024-Update
PSME_00001096-RA	No alias	(at2g29120 : 535.0) member of Putative ligand-gated ion...	0.02	Orthogroups_2024-Update
PSME_00001098-RA	No alias	(at2g29120 : 637.0) member of Putative ligand-gated ion...	0.04	Orthogroups_2024-Update
PSME_00001291-RA	No alias	(at4g35290 : 534.0) Encodes a putative glutamate...	0.05	Orthogroups_2024-Update
PSME_00001292-RA	No alias	(at4g35290 : 567.0) Encodes a putative glutamate...	0.06	Orthogroups_2024-Update
PSME_00007782-RA	No alias	(at2g17260 : 247.0) Encodes a glutamate receptor....	0.04	Orthogroups_2024-Update
PSME_00009648-RA	No alias	(at4g35290 : 566.0) Encodes a putative glutamate...	0.03	Orthogroups_2024-Update
PSME_00009649-RA	No alias	(at4g35290 : 475.0) Encodes a putative glutamate...	0.04	Orthogroups_2024-Update
PSME_00021963-RA	No alias	(at1g05200 : 294.0) member of Putative ligand-gated ion...	0.03	Orthogroups_2024-Update
PSME_00027643-RA	No alias	(at2g29120 : 565.0) member of Putative ligand-gated ion...	0.03	Orthogroups_2024-Update
PSME_00028974-RA	No alias	(at2g29120 : 387.0) member of Putative ligand-gated ion...	0.05	Orthogroups_2024-Update
PSME_00028975-RA	No alias	(at1g42540 : 174.0) member of Putative ligand-gated ion...	0.04	Orthogroups_2024-Update
PSME_00032126-RA	No alias	(at4g35290 : 347.0) Encodes a putative glutamate...	0.05	Orthogroups_2024-Update
PSME_00032127-RA	No alias	(at4g35290 : 436.0) Encodes a putative glutamate...	0.05	Orthogroups_2024-Update
PSME_00033212-RA	No alias	(at1g42540 : 242.0) member of Putative ligand-gated ion...	0.04	Orthogroups_2024-Update
Potri.001G374300	No alias	glutamate receptor 2.7	0.02	Orthogroups_2024-Update
Potri.011G062900	No alias	glutamate receptor 2.7	0.02	Orthogroups_2024-Update
Potri.018G010400	No alias	glutamate receptor 2.7	0.02	Orthogroups_2024-Update
Potri.018G011650	No alias	glutamate receptor 2.7	0.03	Orthogroups_2024-Update
Potri.018G011800	No alias	glutamate receptor 2.8	0.03	Orthogroups_2024-Update
Potri.018G096500	No alias	glutamate receptor 2.8	0.02	Orthogroups_2024-Update
Seita.1G009400.1	No alias	ligand-gated cation channel *(GLR)	0.01	Orthogroups_2024-Update
Seita.1G346100.1	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
Seita.2G212900.1	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
Sobic.010G231300.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Sobic.010G231500.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Sopen05g026960	No alias	Receptor family ligand binding region	0.03	Orthogroups_2024-Update
Sopen06g022620	No alias	Receptor family ligand binding region	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0004888	transmembrane signaling receptor activity	None	Extended
MF	GO:0004970	ionotropic glutamate receptor activity	IEA	InterProScan predictions
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	None	Extended
MF	GO:0005230	extracellular ligand-gated ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0008066	glutamate receptor activity	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated ion channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022824	transmitter-gated ion channel activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022835	transmitter-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022839	ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030594	neurotransmitter receptor activity	None	Extended
MF	GO:0038023	signaling receptor activity	None	Extended
MF	GO:0060089	molecular transducer activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Predicted GO
MF	GO:0004601	peroxidase activity	IEP	Predicted GO
MF	GO:0005507	copper ion binding	IEP	Predicted GO
BP	GO:0006508	proteolysis	IEP	Predicted GO
BP	GO:0006873	cellular ion homeostasis	IEP	Predicted GO
BP	GO:0006875	cellular metal ion homeostasis	IEP	Predicted GO
BP	GO:0006879	cellular iron ion homeostasis	IEP	Predicted GO
BP	GO:0006950	response to stress	IEP	Predicted GO
BP	GO:0006979	response to oxidative stress	IEP	Predicted GO
MF	GO:0008107	galactoside 2-alpha-L-fucosyltransferase activity	IEP	Predicted GO
BP	GO:0008152	metabolic process	IEP	Predicted GO
MF	GO:0008199	ferric iron binding	IEP	Predicted GO
MF	GO:0008233	peptidase activity	IEP	Predicted GO
MF	GO:0008236	serine-type peptidase activity	IEP	Predicted GO
MF	GO:0008417	fucosyltransferase activity	IEP	Predicted GO
MF	GO:0016209	antioxidant activity	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Predicted GO
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Predicted GO
MF	GO:0017171	serine hydrolase activity	IEP	Predicted GO
BP	GO:0030003	cellular cation homeostasis	IEP	Predicted GO
MF	GO:0031127	alpha-(1,2)-fucosyltransferase activity	IEP	Predicted GO
BP	GO:0042546	cell wall biogenesis	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
BP	GO:0046916	cellular transition metal ion homeostasis	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
BP	GO:0048878	chemical homeostasis	IEP	Predicted GO
MF	GO:0050662	coenzyme binding	IEP	Predicted GO
BP	GO:0050801	ion homeostasis	IEP	Predicted GO
BP	GO:0050896	response to stimulus	IEP	Predicted GO
BP	GO:0055065	metal ion homeostasis	IEP	Predicted GO
BP	GO:0055072	iron ion homeostasis	IEP	Predicted GO
BP	GO:0055076	transition metal ion homeostasis	IEP	Predicted GO
BP	GO:0055080	cation homeostasis	IEP	Predicted GO
BP	GO:0055082	cellular chemical homeostasis	IEP	Predicted GO
BP	GO:0055114	oxidation-reduction process	IEP	Predicted GO
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Predicted GO
BP	GO:0098771	inorganic ion homeostasis	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001638	Solute-binding_3/MltF_N	69	384
IPR001320	Iontro_rcpt	385	416

External Links

No external refs found!

PSME_00021964-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation